Gene detail

Detailed information of BRAKERKYLP00000010248.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: CAH3154797.1, unnamed protein product [Porites lobata]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000010248

ATGAGCGCTGTTTATTTAGGTAGCAGCCAGCTCAGTCTATCAGCAGATAGAAAAGCCTGCTTGGCTTTGCGTAGATGTGGGCAGTTTAACTTCGTTTCGACAACAGTTGTTACGAGTCTCACGATTACAGCTCTATCATTTGAGCGCTACGTTGCTTGCCTTCATAGTTTTCAACTGGACACAATATTTAGTTCGAAGAGAGTTTCATATGGGTTATTCATTATTTGGGGTCTTGGTGGAGTTCTTGGAGTAGCGACTGCATTGTTCAGTCCCGTGTCTCAGACAATAAAACTTGGCGATGGCAATTCAATGGTGCAGACTATCATTCCTCTGTTCGTATTCCCTTCATCCTTGATAATCATACTAGTACAGTTAAGGTTGTACCTTCTTAGCCGCACAAAATCAACGGATGTTGCACCTGTTCCAGATGGCACTAACAACGCAGAGGTCGCCGAATTTCGAAAGAGACAAATAAGAATAGCAATTGTCGCGGGGCTCACAGCATTGCTTTATCTGCTTTGCTTCATTCCTGTCAGCTTCTTTATTTTACTTCAAACGCAAGGAGTAGATTCCGATACTGGCAAGTTCCAGATGATCGTATTTGGGTTAAGGATGGCGAATGGTATCATTGACCCGCTACTCTATGGCATTGGAATCAAGGATACCAGAAAAGCCGTTATGAGGGAATTAAGAAGCTTCAAAGTGGCAGTACTTGAAAGGCTACAGTCTTCAAACGTCTGGCCACAGCTGTTCGTTAACGAACATTCTGTTcgtgatgatgatattgaaaatttAACCGAATCAAATTCGttaatttgttttgcttttttttctttttttgtgtTACTGTTTAAGTTAAGCTCTGTCATTATACGCATGCTCGTGTCTGCATACACAGAGCTAAGCATTGTTTTCAAAACTGACCAGGGGCTGTCTGTAATGGCGGAATCAATTGCAATGGCCTCCTCGGCCACGTTCAAGTGTAGGAAATGTAGACATCTATTGTTTTCCTCTGACGATTTGTCGCCAGTTCATGCTCAGGTACCACAGTGCTCTTCTTGGTACCTGAAAGATGATGATATGTTGCTGTGGGTTCAAGTTCTAGTTGATGAGTCTGGATGGACTGAGGGAAAGCTTTACTGTCCAAAATGCAATGGTAGGGTTGGGGGTTTTGATTTCCTCCATGTGGTTCATTGTTCATGTTTAGTGGATGTCATTCCAGCAATCTGGTGCCCTAAAAGCAGAGTTGATATTGCATCAAAGTTTATCCTGAAATCATCACAGGGACAGACCATGGATACAGAAGGAAGTTGCAATACAGATATTGAGACTGGAAATGACTCATCACTGAAAGAGTGCACTAATGGAAATACCTTGGATGATATGACTGATAATAAGTACAGTGCAGTTGATACTGCTTATGAAACTGAAATGCAGAACTCTGTGATTAAAGCTCTCAGAAATTCTGGAAGTACATGTATTAGAACATTGCATGAAACTCAACATCCAAAATTGTCTGCTATTGGTAGCCAGAATTTAGAGACCATGGAAGCTTCAATTTGTGACCAATGCAGTCTTGCAAGTagatttgttgtttgtaaaGATTCATCTGTGGAAGTGAAGCCTATGCAGCACTGTCATTCCTGCAAAGGTTATTCTATTTCAACCAATTGTTGTGGAGCAAATGTTCCTTCCTGTACTGACAATAGTGTAGATGATTCTTACATTTCAGTAAGAAATATACAAGAAGGACTAAGAGAAATTAGAAGAGAGGTTGAAAATCTATACCCTAGATGTAACTTTGATGAAAATTCTAGGAGCAGAGAATTCACTGTTAGGAGAAAGAGAAAGccaagaagaagaggaagatgcAGTTGGCAGCATGGATCAGATTATTTTAAGTACATGAAAGAAATTAAAGAGACTAAAAATCCAAGTGCCTCTCAAATGAGTGCTGAAATGTCTATTTCAAAGCAGAAGTTACATGAATTTGGCAGAAATTGTGAGAAAGAAAAGGTATGTTTATTTTAA

Transcript

BRAKERKYLT00000010248

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3U827	E3 ubiquitin-protein ligase RNF180 OS=Mus musculus OX=10090 GN=Rnf180 PE=1 SV=2
Q5RAK3	E3 ubiquitin-protein ligase RNF180 OS=Pongo abelii OX=9601 GN=RNF180 PE=2 SV=1
Q86T96	E3 ubiquitin-protein ligase RNF180 OS=Homo sapiens OX=9606 GN=RNF180 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006840 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR033263 all species →	Family	E3 ubiquitin-protein ligase RNF180	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46717 all species →	E3 UBIQUITIN-PROTEIN LIGASE RNF180	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0031227 all species →	Cellular Component	obsolete intrinsic component of endoplasmic reticulum membrane	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0042415 all species →	Biological Process	norepinephrine metabolic process	Interproscan
GO:0042428 all species →	Biological Process	serotonin metabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000010248.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.