Gene detail

Detailed information of BRAKERKYLP00000012347.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_027058801.1, VPS10 domain-containing receptor SorCS1-like [Pocillopora damicornis]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000012347

ATGAAAGGTAAAGACTACAATACAGCAAAAAATTTGTATAATTCTGGTTTTGCAGAGGAGTATACATCAAGGAAAAACGGGATGTTTGATAAAACCTCAGATGAAAATGTGAAAGAGTCGAGTACAAAAGCACCCAAGTTGAAATATATGCTGCCATCGTTTACAGAAACAGCACTGGGAAATGATACTCACCATGGTGCAATTGTCACCTGGACAAACTTTGATAGTAAGGTGCTGTTCATCTTAACATGTGACCAAATTTTGAAGTATAACAGAAAGTCCTTTTGCACTTCAAAGTCTAATGTATACAGATCTTTCAATTATGGAGAGTCATTTGATTTGGAATTGGAGAAATTTGCCAATACGTCAATGATAAGTGCTATATTTGTCTCACCGATCAATAGGAATTTAGTATTTGCTTTGGACAGAGCTAACAAAAATTTGTATATAAGTGTCGATGAAGGTACTACATATTATTCAGCTGGCCTCACATTTGATCCAATGCTGTTgtcatttcatccaacattagcaaatattattttggtcagaGATGCCAGTAATAAAGTATACATTTCAAAAGACACAGGAAAAAGTTGGAGACTATTGATGTCAAAAGTCAGGCAGTTTTTCTGGTCACAGCATAAGAACACATCACAGATATTTCTTGAAGTATTGTCTATGCAAAATACAAAGCTACCCACAAAGAATTACTCACTTGTATATGTATCAAAAGAACCATTTAATGGTAAGGCTCATTTGCTTGATCCAACTTTGGGCCCTATCTACCCAAACTCCCTTGTTGTAAAACaagattatatttatattcaacaaAAGACTTCAGCAGGAAATAGAAGAttacttgttttttataaacatTCACCAGCCTTTGTTGAATGTGAACTACCAACAAATCAATTGCACATGGACTACCATTTCTTACAAGGGGATGTAAATCAAGTTATGTTAGCAGCATTAACAGTTACTGGGATAACTAACTTGTATATTGCTAGTGAAAATGGACAGCAGTTTTCATTAGTCCTAACTGCCATAGAAGCCCATTGGGGTATAGGAGAAACGGTAGTTGATATTCACAGAGTGCATGCTGTACCTGGTACATTCATTGCAAATCAAATTGGGAAAGGAACAgttatatcatataataatgGTGGGTTGTGGAAAAGGCTCATTCCTCCTGACTATGATGCAAAGGGTAATAGGATTAACTGTTATGCTTCAAATTGCATATTTCGATTATCTCTTTATGTTAAAGATAGGAATATTGTTGGTTGGTCACCTATAACTGCATCAAGACATGTCCCAGGAGTCATCATAGCCCAAGGAACTATAGTCAGAGCAAGCAGGGATATAACAGTCTCACTTTGTGGCTATATATCATTAGATGGAGGTAGAAATTGGAAGCAAGGCTTGCTGGGAAGGCATGTTTATAGACTGCTAGATCATGGGGCATTGTTTGCCAGCATTGCTATCACAGATCcatttttgcatcaaaataagaataaattaGAGTTCAGTTGTGATGGAGGGAGTACTTGGAAATCTGCTATTTTGCCTAACCAACTATCAAGAGTTGTGGGAGTGGCAGCTCATCCTGCCGCAAAGGCAAGCatattgaagatatttggtgcTGATATATCTGAATCAAAAATGCTTGCATGGAGAATTTGGAAGGTCAATTTTTCAATGGTGTTTGATTACAGATGTTCAGAAGAAAATTATACAATGTGGACTGCAGGCCCAGAAAAGATAGGAAACTCATGTATTTTAggtaaaaaatatatttatgaaaagagaaaacatgATGTCTGTTGCTCATATGGAAGCAGTTATGAACGCAAGTTAAACGTAAGTGTATGCCCTTGTTCGATGGCAGATTTTGAATGTGATTTTGGCTTCAAAAGGGACAAGATTCGAGGATACTGCACTCCAACAAGTTTTGCATCTTTGAATCCCCCAGTTAACTGTCCAGAGGGGAAAAAATATGTCCAATCAAAGGGCTACATCAAAATCAAAGGTGACAAGTGTCAAGGTGGTATTGAAAAAGAAGTTGTACCTGTAAGAAAAATGTGTCCTGCTATGGCTCCAGATGGGTTGTCATTATCTGTTCAAAAGTTCTCAATAGCTTTGGGCAAAATAGCTGAGGTAGTCCTTCACCAAAAATCTGGTTTTCTTGGCACAAGGTATACTTGGGACTATGGAGATGGTGCTATGGAATACAACTTGACATTCAGTGAAAATAAGCGTTATCACAAATACAAAAGAGTTGGTACTTATGAGATCTCAGTGCTAGCATCCAACACTGCAGGCTCATTTACTGCAAAAACTGTTATGAGAATCATTGAGAGGGTATCTGAAGTGTTTCTTCATGTAACAAAACCTGTAGTGGCAATGGAAGAGGCAACGTATACTGCAGAACTGTTTACCCATGGGCCAACAGTTGCAGATCGCCATGGTTTTGTTCATTTTGCTTGGATCTTTGAACCAATAGAGACACCAGTTCTATCACTTAATTCATCAGTTAGGCATACTTACAGCTCACCAGGTACTTATGAGGTTGAAGTGAGAGTTTTCAATGCAATAGGTGTTGTTTCCACTACTATGTCTGTAACAGTTTTTGGTGATGTGCGGGTTTTGGAGTTGCAGTTCTCAAGTGTACTTGATCTTCTTAACAATGGAACAAAAGAATGGAATAACTTTTTTGAACTCATGGCTACCCAGTACCTGATAGAGAAATTTAAGATTCGTAGAGAAATGGTGCTAGTGAGTGTCTCTAAGTCACTACCCACCATTGTAACTCTCTATTTGGTGCAGAACAAAGTCCCAACAAAAGCACCatctgatgatgatagtgataagaCCACTAAGCCATCAAAATCTAGCACCCAGCCCATTGACACAGTCATGAAGGACATAATCAGCCATGTGAGGGGCCGCAGATTGTCATTTTTTTTGATGGGGCAAGAGGTTGCAGTTTTGGAGGTGACCATCATTAGGGGTGCTAGGAAGAGAAATAGTACTATTTCTAAAGATTACAGATTATTATCTAATGCAAAAAGAGATCTATACATTGGAGTATCAGTTGGAGGGTTATTTTTTGTAGCTATTATAGTTTTTGGGGTTGTCTTCTGTAAGAGGAAATTGAAAGGTAAAGATACTGGACCATACCTTGAGATGAGAGAAGATGGTGACACAGCAGATTATGGTATGAGTGCATTTGTGGAGACATAG

Transcript

BRAKERKYLT00000012347

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PHU5	Sortilin OS=Mus musculus OX=10090 GN=Sort1 PE=1 SV=1
O54861	Sortilin OS=Rattus norvegicus OX=10116 GN=Sort1 PE=1 SV=3
A2QHH4	Vacuolar protein sorting/targeting protein 10 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=vps10 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15901 all species →	Sortilin_C	Sortilin, neurotensin receptor 3, C-terminal	Domain	Interproscan
PF00801 all species →	PKD	PKD domain	Domain	Interproscan
PF15902 all species →	Sortilin-Vps10	Sortilin, neurotensin receptor 3,	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031777 all species →	Domain	Sortilin, C-terminal	Interproscan
IPR035986 all species →	Homologous_superfamily	PKD domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000601 all species →	Domain	PKD domain	Interproscan
IPR006581 all species →	Domain	VPS10	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR022409 all species →	Domain	PKD/Chitinase domain	Interproscan
IPR031778 all species →	Domain	Sortilin, N-terminal	Interproscan
IPR050310 all species →	Family	VPS10-related sortilin family receptors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12106 all species →	SORTILIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006892 all species →	Biological Process	post-Golgi vesicle-mediated transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000012347.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.