Gene detail

Detailed information of BRAKERKYLP00000012481.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_002159261.3, cytoplasmic polyadenylation element-binding protein 4 [Hydra vulgaris]
Species abbreviation MPAPU · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000012481

ATGGTCGATTTTGGTCCAACGAGCGTGACCAATACAGTTACCCCGAGTGAATTCGGCTACAATACACCACTTTTCTTAATGAAAGAAGAAGGTCTTGAAAAAACTTCTACGAGCAGTGAAGTACAACCAAAAGCAACGCGCGATTTCAAGGAGAAAAATACTTCAGAGGGAAAAAACTCTCCATCCGAACTGGTTTTCAAAACTTCAAATAATTCAGGAGAAGGTGTGAATTTGAACGATTCTAAAGATTCTGACGAGGGTTTCTCCTCAAGCTTCTCTCCTTCAAGCGAGCCGCAGATGCTACAGCAAGAAACTTCTGGTGTTAATAGTGCATTTTGGGCTTCGCAACGAGACGATTTTCTTCAACACGAACTTCATATGGGAGTGAGCAGCAGTCCATTGATGTTCAATGTTCCTTCGTCAAATTCCCATTTTTCATCAAGTTCTGCATTAAGAAGAACATCTACGCCCGGCACAATGCCAGCATATAATTCAGGAACTAGCAGAAGGCCGTTCCCGGCAGTTTCAACATTGCTAGCGTCAAACAAAGCAGTTGCCAATGCGTTGGGTGTCTCAAACTGGAACGCAAGTCCTTCGCCATCTTCAACATGGCCAAATAATTCATCAAACAATGGAATGAGTTCTAACTGGCCCCAAAGTCGTCCACAGCTTCCTTTTCCCATCTCTTTGGGATCGCAGCAGAACTCTTCATACACACAAAGCAGATCGAATAAATTCACTCCATTCCCAATCTCAAGCCTTCCCCAAAAGCCATACAAAAACGGCAGGCCAGTGCCATCTTTTTCATCTACTCCAACATCAAGTTCAATGAAACATTCATCACCATTTGGACTTCAAAATCAGCTAAACTCCCAATCAGGACTTGATGCAACAGTTGTAGATGATATCACTCAACTCACAAACACTTTTTCACACTTGACGACATCAAGTGAAATAACTACAAATGGTTTATTCCCCAGCCAGGAAAGGAATGACATTATGAAGTATTCTTCACTGGAACCAAGACTGCTTGATATGTTCAGGTCTCCTGTTGACAATCAAGCAGATCAGTTACAAGCATTCAGATATCAGTTGCAAAAGAAAACATTCCCGCATCAACGCGATGACCAGATTGTTCCTTCGTTTAATTCATCACTAAATGGTTCTCCCCGCTCTGACTTGGACATACTTGAAAGATTCTCAAGGAAGGTATTTGTTGGTGGACTGCCTCCAGACATTGACGAAGATGAAATTCATGCCAGTTTTTGTCGATTTGGACATTTGACTGTGGATTGGCCGCACAAAGCTGAGAGTAAATCTTACTTTCCACCAAAAGGCTATGCATTCCTATTGTACAAAGAAGAGATATCCGTGCAGAGATTGATGGATGCTTGCATGGTGCAGGATGGTAAATTCTACTTGTGTGTCTCCAGTCCAACAATTAAAGACAAGCCAGTCCAAATTCGCCCATGGAATCTTGCTGATGCCGATTTTGTGATGGATAGTTCACAGCCTCTTGATCCAAGGAAAACAATATTTGTTGGTGGAGTGCCAAGGCCTTTAAGAGCAGTTGAATTGGCAATGATCATGGACCGCTTGTATGGAGGAGTCTGCTACGCAGGCATTGATGTTGACCCAGAATTGAAATACCCTAAAGGTGCTGGTAGGGTTGCCTTCTCCAATCAACAGAGCTATATTGCAGCCATTAGTGCAAGGTTTATTCAGCTGCAacatggagacattgataaaaggGTGGAAGTGAAACCCTACGTCCTTGATGATCAGATGTGTGATGAGTGCCATGGGGTGCGTTGCAATGGTAAATTTGCACCCTTCTTTTGCTCAAATATAACATGCCTTTTGTACTATTGCGAACAGTGCTGGGCAATAGTACATTCAAGACCTGGCCGTGAGTTTCACAAGCCACTTGTCAAAGAAGGAGGTGACAGGCCACGCCCATCCCCAATGAATTTTCGTTGGTAA

Transcript

BRAKERKYLT00000012481

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7SXN4	Cytoplasmic polyadenylation element-binding protein 4 OS=Danio rerio OX=7955 GN=cpeb4 PE=2 SV=1
Q812E0	Cytoplasmic polyadenylation element-binding protein 2 OS=Mus musculus OX=10090 GN=Cpeb2 PE=1 SV=1
Q7Z5Q1	Cytoplasmic polyadenylation element-binding protein 2 OS=Homo sapiens OX=9606 GN=CPEB2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001456 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16367 all species →	RRM_7	RNA recognition motif	Domain	Interproscan
PF16366 all species →	CEBP_ZZ	Cytoplasmic polyadenylation element-binding protein ZZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034819 all species →	Family	Cytoplasmic polyadenylation element-binding protein	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR038446 all species →	Homologous_superfamily	CEBP, ZZ domain superfamily	Interproscan
IPR032296 all species →	Domain	Cytoplasmic polyadenylation element-binding protein, ZZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12566 all species →	CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0006417 all species →	Biological Process	regulation of translation	Interproscan
GO:0045182 all species →	Molecular Function	translation regulator activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02602	CPEB, ORB; cytoplasmic polyadenylation element-binding protein	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.