Gene detail

Detailed information of BRAKERKYLP00000012483.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_020627592.1, endoplasmic reticulum-Golgi intermediate compartment protein 1-like isoform X1 [Orbicella faveolata]
Species abbreviation MPAPU · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000012483

ATGATTTCCGCCTGTATCTATTTATGCACGAGCATTTCTGAATTATCGATTCCAGGTGTAAAAAGGCCGAAAAACCTTTCGGTAGGGAAAGCTCCTCCTTACAATGTTATGAATGGTAAAGTAAAGTTGGGGAAAAACAGCAATTCAGCGACAGGTGGAGATGCTCCGAAGGAGGCTTCAGGGAAAATAGAGCTTATAGACCAACAACCAACTGGACAGAATACTACTGAAATGGGCGAGCCACCAAGATATCCTTTAAATGTTGAATCTGCTGAGGCCCAAGCTCATGAAAGTAGAATTACGGGATGTCGTGATCATCCGGACGTATCACATGTGTGTTCCAATTCAAGAAATGCCTGCTTTTGTGCAGAGCATGAATCTTACACTTACGCATATTGTAGGAAGTCCTGCAAGTACTGTGATGCAAAGGCTAAAGCATACCACAAGTACTGGAGACTCAGAGCAGCAAGTTCCTTTAATCCAAGTTGGATGATTTCGAGGATCGAATTCTACCGTGCACGAGGACTGAACATGACGTTATCTGTTGACCCCAGTTATGCCTATTCAAGTTCAAATTATGACCCAGGATTCAGTGCAGCCAAAGCATTTGATGATAATCCTACGACGATGTGGATGCCAAGTGGATGGAGCGCacataatgacaatgatgactGGATTGGCTATGAGTTCCCAATCCCAGTTCATATTGGGTCAGTTAAATTGATGGGAGCTGTGAAGTACCCTAAAGCTGCTCCGAACAAAGTGTATGTTGAAGCTGCTAACGAAAAATACGGACCGTTTGAAACCAAGTGGATGATCAGAAATCCGGATTTTGCAACTGAACGAGTATTTAGTTTCATCGAATGTGATGTCTTATGGCAAAGGTATGAAACTGGTGAAGAACCTATTTGTTTCCGATTAATTACCAAATACAAAAGCTGGCTAGACGCTAGTTTAGAATGCGAGTTGGAAGGAGGAGAGTTGGCAAGTATTACATCAGTTGAAGAACAAGACTTTATAACGAATGAAGTTAAACTTTGTGGCTTTACATGGATTGGCTTAAATGACCGTGCTGAAGAAGGAAGATATGTTTGGACCGATAAATCAAATACCTCATTTTCGAATTGGGATGAAAATAAGGTTTACGATGAAGTTCAAAGGCATTACGAGGATTGCGTTGGAATTAACGAAAAAGGCGACTGGTCCACATTCCCGTGTCAAAATAAGCACTTCTTTTTATGCAAGAAAACTCTAGCCGAGCCGGATATGCCAGTCCAAGAAGAACCTCCTGCACCTGAAACACCACCCGTAGAGTTCATTGCACCAAATTATACAATGCCTGTTGTTACTGCGGAAGCTCAGACTGAGGAGGAGGAACAATCAGAGGAggataaatataatgaaatgatGGCTTCTATCTCCATGTCAAGAATGAAAGAGTTAGGATTAAAACCACCAGAAGCTATTGCCAACTTAGAGGCACTTCCACCTAAGCTTGGTGAAAAGTTGAACAACATGACAGAGCAGGCTTTGAAGAGTGTGAACAAAACGAAGATAAGCGATAACCTGAAGGGTACTGAGAAACTGATCGAGCCCCCACCGAAGCCAAAGAAGCCCTCAATGAATGGAggcaaagaagaaaagaatATAACTACACTGAGGGTGCCATCCTCTCCCGGGCAGGAGTTAGTTGAGGAGCTACCTGGTGTGAAGCCTCTTGATTTACCTGGTAAGGAAAACGAGAAAGAAGAATCTGACAAGAATATGGACAAGAATGGACAAAAGGTGAAACCACCCCCTGCTCAGGAAAGCGGCCAAGATGGTGAAACGGGGCTATCCATTGGTGAATCAGGGGAAGAAGGTCCAGCCGAGGGACAAGATAAAGAGGAGAAACCTGTAGATTTGCCAATGAAGGAACAAAAACTTAAAAAGATAAAGCCTAAGAGaccaaagaaaaagaagaataaaaagaagaagaagcCGGAAAGTAAAGCACCAGAGATCCCACCTCAGTTGAAAAACCCAGCTCCAAAACTCCCGCAAATGCCAAATGGTGGTCCACCGCCTCCATCTCCATACTATTATGGTACACCTGGGTACAAGAAGCACAAAGTTGGAGACTTGAAGCCATTTTCGATAACGTTTGGTGGTAAACAAGTGACTAATGTACAGGCGAAAGATAATTTGAAAGTCCccagtgatgatgaagacagtAAGTCAAGTCAAGTTGGAGTGAATAAAGCTGACAAAGATGAAGAATCATATGAAGATTCAGAGGATGATGAGGAAAAATCAGCAACAGAAGAAGGTGAATTAAAAGCAGAAGATGCCAGCGGAGCATCTGGTTCTGGAATTGAAGGATTTGACCCTGATTTAGATGAAGAATTTCTTGACATGGCCATTGATGATATTTTATTAGATATTTACAGAAAAGTTCCAAAGGATCTAACCCAGCCAACTTATGCAGGGGCAATAGTGTCAGTATGCAGTGTACTATTCATCATATTCCTAATGATGTCTGAGCTAGCCAGCTTCATACAGACGGAGTTGGTCAATGAGTTGTTTGTTGATACACTACAAGATGGAGAAAAAATCCCTGTGAGATTGAATATTACACTTCCAAAAATGAGTTGTGATTATGTTGGGCTTGATATTCAAGATGACATGGGAAGGCATGAAGTTGGGTTTCATGAAGATATAAAGAAAGATGAAATAGTTGGAGGAgGCTGCAGGTTTCAGAGtcatttttatataaatagGGTTCCAGGGAACTTTCATGTCTCTACTCATGGAGCTGGACATCAGCCATCAAACTTTGACATGTCACATGTGATCAATGGATTGCAATTTGGTGATGTGATAGCTAATGAAAATGTTAAAGGTGCATTTACAGCTCTGTCAGAATACAACAATCTTGATGCAAATGGTTTGTCATCTCATGATTATGTTTTGAGAATCGTTCCAACAATATACGAAAGGACTGATGGTACTACACAGAATTCTTTCCAATACACATGGGCACATAAGGAATATACTGCTTATGGTCATGGCGGCATGGGAATTGTTCCAGCTATTTGGTTTCGTTACGATTTAAATGCAATCACAGTCAAATACATCGAAAGGCGGAAGCCATTCTATCACTTCATTACAACGGTTTGTGCAATTGTTGGTGGGACATTTACTGTTGCAGGAATAATTGACTCGATGATATTTACAGCAAATGAAATATTTAGGAAAGCAGAAATGGGAAAACTTAGCTAA

Transcript

BRAKERKYLT00000012483

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q969X5	Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Homo sapiens OX=9606 GN=ERGIC1 PE=1 SV=1
Q9DC16	Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Mus musculus OX=10090 GN=Ergic1 PE=1 SV=1
Q4V8Y6	Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Danio rerio OX=7955 GN=ergic1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007353 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF07970 all species →	COPIIcoated_ERV	Endoplasmic reticulum vesicle transporter	Family	Interproscan
PF13850 all species →	ERGIC_N	Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR045888 all species →	Family	Endoplasmic reticulum vesicle transporter	Interproscan
IPR012936 all species →	Domain	Endoplasmic reticulum vesicle transporter, C-terminal	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR039542 all species →	Domain	Endoplasmic reticulum vesicle transporter, N-terminal	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10984 all species →	ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for BRAKERKYLP00000012483.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000012483.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.