Gene detail

Detailed information of BRAKERKYLP00000013235.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: EDO31796.1, predicted protein, partial [Nematostella vectensis]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000013235

ATGACAAACTTATCGGCATCGAATCTAAAATCAAGAAGAAATCGCACGTCATTTACTAGATTTCAACTTGAAGAAATGGAACGGGTGTTCGCTCAAACACATTACCCTGATGCTAACATCCGCCAAGTCATGTCAGAAAAGCTTGACCTAGCAGAAGCTAAAATTCAGGTATGGTTTCAAAATAGACGTGCCAAGTGGCGAAAGAAAGAGAAACACCTTGAACCAAACACAGCATCTAACTCGGAAGATTCGTTTATATCCAACGATGCCCAAGCTTTCCAATCACCATTTACATATGCAAACAACGAAGAAAAGTTCCCTGCATTTAGCGACGTTAAAAGCCCTGAAGCTCATAATCTATTCACATCATCATCAGAGACCAACAACGAACAGATTTTAAACAATGGTTGCACATTTCACACCGGCACACAGGGACTCCCGCCAGGATACTACTTTGTTCCATTTCTTAGTTCACAGGCTTTACAAGAACAAAGTTCCATGCTATGCGGATCGAAGACCAACAATGATCTATATTCAAGCTACAACTATTTTTTGAACCAACAGCACCACTTGGGTGCTGCAGGGTATCCGCTTTATGTTATCCAAGATCCAACAACAGGTTTCAGCCAGGCGTTCTTGCATTTCTCAGCATATAATTTCCAATACAGTAGTAATGAACTTGTGTCCAGTATATCAGCAGATTTCCACAGCAAGTTTGATAAAGATCGTAGTGAAAGTGATGCTCAATTTAATAGCGATGTTATGGATCAAAATTCAAATGCCAGCTCGTCTTCATCTTCAGAACCAGAGAGCAGCGAAGCTTCTCCGTTATACTCTCTAAGTTCAGAAAACTcctttgatttcaaatttgagTCAGACGAAGAGCAGTTTGAAGAGAAAACTGAGATGCCGACTCCGACTAAACAGTTTGACACGAAAGACCACTGTTCAAGCAAAGTTGAGGAAAGTACAAGTTCTTCTCCACCGGAAAACTTGCAATGCTGTAGTTGCGAGGCAATAACGCTAGATGCCGTAGACAATCCATATAATGATAACAAACATAAGAAGGAAAATAGCCAGTTGCATATGAACAAGACGGCTTGCTCACTTGCAAGTGACACATCAAACAGAATTGCAAGCACTTTCATAGAAAATCAGCCAAAGGTCAATGTAACCGAAAAGGACAACAGTTCTATTGAAACAAACTGTGAAGCATCGGAATACTCCGATGAAAACGTTAAAGACTCCTTAGAGCACTATGTCGATTCTTTAGTTTCGATGGAAGAGGAGGATCTTGGTGGAAAGCAAGACAAATCATTGCTCCAAACTCCTGTTCCGACTAAGAAAGGCTTAGAAAGCAACTTAGATAAAAATAAGAGTTTTACACGAAAGGAAGAAGTGCGAAGAAGCCGAAAGCATGGCTTCGTTAGTGGGTGTAGCAAATATATGGATAGTTCAGTTCACACTAGCAAATCTCATAATGAATTCACAGTAAAAATAGAAGAACCTGAAAAAAGTAATGGCGAATTCGCCTTTGCATTTTTCAACAGCGACGATAAAAAGGTGCTGGAAGAGAGGCTCATTCGATCTCAGAGCGAACTACAGCAACTGAACTTTGACGATGAACATGTCGAATCTGATACGCCAAAAGTAAATATATCAGCAAAGAAAAGTCTCAATTTAGAGGAAGAAACTCAAGTATCAAAAGCAAATGACAAGCTTTCGTCATTTGATAGCTCGGGAAATCCAAAAAATAATGCATCCATCGAGTCACCGAAAAAGAGGCAGAGACTGAGTAGCCTCACTTTAGATTCTTTTACAAATTTGTACAATCACGAAGCATTTCTAGAAAAGCCAATACTGCCAGATCACTCAAACTTTACTACCGGTGATAGCATTAAGCAAGAGAGAGACAATTTAGAGGGTAATGTAATTTTTGAGGGGTCCTTAGATCTGCACAGCATCCGAGAAGCATATtgcaaaatgaccaattttgtaATGTCTTAG

Transcript

BRAKERKYLT00000013235

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95076	Homeobox protein aristaless-like 3 OS=Homo sapiens OX=9606 GN=ALX3 PE=1 SV=2
O70137	Homeobox protein aristaless-like 3 OS=Mus musculus OX=10090 GN=Alx3 PE=2 SV=1
Q4LAL6	Homeobox protein aristaless-like 4 OS=Bos taurus OX=9913 GN=ALX4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000383 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR043562 all species →	Family	Retinal homeobox protein RAX/RAX2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46271 all species →	HOMEOBOX PROTEIN, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000013235.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.