Gene detail

Detailed information of BRAKERKYLP00000013235.1 in Mastigias papua

Genomic Location: :...
NR annotation: EDO31796.1, predicted protein, partial [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKYLT00000013235

ATGACAAACTTATCGGCATCGAATCTAAAATCAAGAAGAAATCGCACGTCATTTACTAGATTTCAACTTGAAGAAATGGAACGGGTGTTCGCTCAAACACATTACCCTGATGCTAACATCCGCCAAGTCATGTCAGAAAAGCTTGACCTAGCAGAAGCTAAAATTCAGGTATGGTTTCAAAATAGACGTGCCAAGTGGCGAAAGAAAGAGAAACACCTTGAACCAAACACAGCATCTAACTCGGAAGATTCGTTTATATCCAACGATGCCCAAGCTTTCCAATCACCATTTACATATGCAAACAACGAAGAAAAGTTCCCTGCATTTAGCGACGTTAAAAGCCCTGAAGCTCATAATCTATTCACATCATCATCAGAGACCAACAACGAACAGATTTTAAACAATGGTTGCACATTTCACACCGGCACACAGGGACTCCCGCCAGGATACTACTTTGTTCCATTTCTTAGTTCACAGGCTTTACAAGAACAAAGTTCCATGCTATGCGGATCGAAGACCAACAATGATCTATATTCAAGCTACAACTATTTTTTGAACCAACAGCACCACTTGGGTGCTGCAGGGTATCCGCTTTATGTTATCCAAGATCCAACAACAGGTTTCAGCCAGGCGTTCTTGCATTTCTCAGCATATAATTTCCAATACAGTAGTAATGAACTTGTGTCCAGTATATCAGCAGATTTCCACAGCAAGTTTGATAAAGATCGTAGTGAAAGTGATGCTCAATTTAATAGCGATGTTATGGATCAAAATTCAAATGCCAGCTCGTCTTCATCTTCAGAACCAGAGAGCAGCGAAGCTTCTCCGTTATACTCTCTAAGTTCAGAAAACTcctttgatttcaaatttgagTCAGACGAAGAGCAGTTTGAAGAGAAAACTGAGATGCCGACTCCGACTAAACAGTTTGACACGAAAGACCACTGTTCAAGCAAAGTTGAGGAAAGTACAAGTTCTTCTCCACCGGAAAACTTGCAATGCTGTAGTTGCGAGGCAATAACGCTAGATGCCGTAGACAATCCATATAATGATAACAAACATAAGAAGGAAAATAGCCAGTTGCATATGAACAAGACGGCTTGCTCACTTGCAAGTGACACATCAAACAGAATTGCAAGCACTTTCATAGAAAATCAGCCAAAGGTCAATGTAACCGAAAAGGACAACAGTTCTATTGAAACAAACTGTGAAGCATCGGAATACTCCGATGAAAACGTTAAAGACTCCTTAGAGCACTATGTCGATTCTTTAGTTTCGATGGAAGAGGAGGATCTTGGTGGAAAGCAAGACAAATCATTGCTCCAAACTCCTGTTCCGACTAAGAAAGGCTTAGAAAGCAACTTAGATAAAAATAAGAGTTTTACACGAAAGGAAGAAGTGCGAAGAAGCCGAAAGCATGGCTTCGTTAGTGGGTGTAGCAAATATATGGATAGTTCAGTTCACACTAGCAAATCTCATAATGAATTCACAGTAAAAATAGAAGAACCTGAAAAAAGTAATGGCGAATTCGCCTTTGCATTTTTCAACAGCGACGATAAAAAGGTGCTGGAAGAGAGGCTCATTCGATCTCAGAGCGAACTACAGCAACTGAACTTTGACGATGAACATGTCGAATCTGATACGCCAAAAGTAAATATATCAGCAAAGAAAAGTCTCAATTTAGAGGAAGAAACTCAAGTATCAAAAGCAAATGACAAGCTTTCGTCATTTGATAGCTCGGGAAATCCAAAAAATAATGCATCCATCGAGTCACCGAAAAAGAGGCAGAGACTGAGTAGCCTCACTTTAGATTCTTTTACAAATTTGTACAATCACGAAGCATTTCTAGAAAAGCCAATACTGCCAGATCACTCAAACTTTACTACCGGTGATAGCATTAAGCAAGAGAGAGACAATTTAGAGGGTAATGTAATTTTTGAGGGGTCCTTAGATCTGCACAGCATCCGAGAAGCATATtgcaaaatgaccaattttgtaATGTCTTAG

Transcript

BRAKERKYLT00000013235

Protein

Uniprot

Uniprot term	Description
O95076	Homeobox protein aristaless-like 3 OS=Homo sapiens OX=9606 GN=ALX3 PE=1 SV=2
O70137	Homeobox protein aristaless-like 3 OS=Mus musculus OX=10090 GN=Alx3 PE=2 SV=1
Q4LAL6	Homeobox protein aristaless-like 4 OS=Bos taurus OX=9913 GN=ALX4 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR043562	Family	Retinal homeobox protein RAX/RAX2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46271	HOMEOBOX PROTEIN, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan