Gene detail

Detailed information of BRAKERKYLP00000014470.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_002157779.1, 50S ribosomal protein L16 [Hydra vulgaris]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6LPR8	Large ribosomal subunit protein uL16 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) OX=290402 GN=rplP PE=3 SV=1
C4ZBS6	Large ribosomal subunit protein uL16 OS=Agathobacter rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 / VPI 0990) OX=515619 GN=rplP PE=3 SV=1
Q8RIG2	Large ribosomal subunit protein uL16 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) OX=190304 GN=rplP PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00252 all species →	Ribosomal_L16	Ribosomal protein L16p/L10e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036920 all species →	Homologous_superfamily	Large ribosomal subunit protein uL16 superfamily	Interproscan
IPR000114 all species →	Family	Large ribosomal subunit protein uL16, bacterial-type	Interproscan
IPR016180 all species →	Domain	Large ribosomal subunit protein uL16 domain	Interproscan
IPR047873 all species →	Family	Large ribosomal subunit protein uL16	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12220 all species →	50S/60S RIBOSOMAL PROTEIN L16	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02866	RP-L10e, RPL10; large subunit ribosomal protein L10e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.