Gene detail

Detailed information of BRAKERKYLP00000014981.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: GCB83474.1, hypothetical protein [Scyliorhinus torazame]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2VE01	Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Bos taurus OX=9913 GN=CLP1 PE=2 SV=1
Q92989	Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Homo sapiens OX=9606 GN=CLP1 PE=1 SV=1
Q4R7R3	Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Macaca fascicularis OX=9541 GN=CLP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004210 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06807 all species →	Clp1	Pre-mRNA cleavage complex II protein Clp1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010655 all species →	Domain	Pre-mRNA cleavage complex subunit Clp1, C-terminal	Interproscan
IPR038238 all species →	Homologous_superfamily	Clp1, C-terminal domain superfamily	Interproscan
IPR045116 all species →	Family	Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12755 all species →	CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031124 all species →	Biological Process	mRNA 3'-end processing	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0006388 all species →	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0051731 all species →	Molecular Function	polynucleotide 5'-hydroxyl-kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000014981.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.