Gene detail

Detailed information of BRAKERKYLP00000014985.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: CAH3043399.1, unnamed protein product [Porites lobata]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000014985

GGTGTCATAGCATTGATAAGTACGTTTGCAAAGGATCCAGAACAATGTCAGACGATTGTTTCTCTATTATTTCCGACTCTTAAACTGAATTCAAATGAAAGAGATCAGTGCAACACGATTGTTACTATAAAGAACCTTGTGAACAACTGCGAAAATACGAAGAATATCTCAGCCGAAATGGTTCATTTATTTGTCCACATAAAGAGCAGGAGTGCAAGAGGACACCTTTGCGATTTATTCAGAATATTGTCCGAGAGAGAGGCAACCTCAGCAAAAGTTTCTGATTTGATATTAGACATGAATGCATGGGACCCCAAGCGTGTGGACGAACCTAATTTTGAACGACGACTGAAGGGATTTAGCTCTTTCACAACTCTGTTGAAGACGAAGGAATTATCAAACAAGGAAATTAGGCCTCTTCTAGCAAATTGCTTGTTCTATTCAGTTGAAAGCCAAGATATGTCATTGAGAGATGCATCAATAAGCTGTATTTTTCATGTGATCGACTTTGTGAAAGAAATCAGTGGGGACAATTTTAACGATTTGATTCAAGTGCTAATTCTACCAGTGTTGAAGAATACATTACGATCAAGAAATGAGGCAATTCGCAACGAGTTTATTGGAATTTTAGCAAAGATTGTGAAAGACTTCGATAAAACACCTATGTCTGATATGAGATTATTGACATCTAGCGATCCTGAAGttgatttctttgaaaatataaAGCATATACAGATTCATCGGCGCATTCGTGCTGTTAGACAGCTGCAACAGATtgtgaaagaaaagaaattcaaacaaaactctctgtttttctttctcctgCCACTTGTTAGTCATTTTATTTTCGACACGACGTCGTCGAAAGACCATAACCTGGTCACGGTATCAATAGAAACAATTGGCTGTATCATGTCTTGTTTGCCATGGCAGAAATATTGTCATCTCCTTAGAAGTTATCTGAAGTTGCTCCCAAAGGAAAAAATTCGGAAGAAGACCATCATCAGGATCATCGTGGCTATTTTGGATGCATTCCATTTCGATCTCTCCGTGCTGACAGAAGAAGATGTTCAAAAAGAGAAATCTCTCAAATCGAAAGAATCAGCTACAATCGACTTAAGTCAAAAAACAAGTAAAGAAAGGAATGGAGAAGAAGAAAATAACGAAGAAAAAGGAAATAACGAAGAGGAAGGAACTGATGAAGATAACATTGATAATGAGATTGGTGTTATTGAAGATGTGGATGAGGGTATTGCACAGAATGACCCTGTTGTGGATGGTATTAATGACTTGGAGGCCAGTCGATTGAAAGCAATTAAAATCCATGATTCTGTTTGTACCTCTATATTACCACAGCTTCAAAAGTCAATGGTAAAGAAGTCATTTGTTGAAGACTACCATCGAAAGTCCCATAATAAAGAAACAGATGAAGATGCAATACTTCGTGTTCCAATTGCTTTGGCGGTTGTGAAACTATTACAGAAGCTACCAAAGACAACGCTCCACGAACAGCTTCCAGGGATTCTCTTGAGAGTTTGTCAGGCGTTAAAAAGCCGTGCAAGAGATGTTCGAGACACAGCAAGAGAAACTCTTGTGGATATAGCATCATCTCTTGGGCCTGAATACTTCTCTTTTGTCTTAAAAGAAATGAAGTCTGTTCTACAGCGAGGCTATCAGCTGCATGTTTTGGCATATTCACTAAAGTCCCTATTCGATGGTTTAATGGAGCAGCTTAAACCAGGGGACTTTGATCAATGTCTTTCTAGTTTAATACAGATTTTAATCCAGGATGTAtttcaaaatgtaaatgaagagAAGGAAGCTGATGGTATCACGGGAAAGTTGCATGAAGCAAAATCAAGGAAGAGCTTTGATTCATTTGAGATAATTTCAAGGTTTGCTTCGCCGTCTTCCTTTCAAAAGATCATCGAATCTATTAGAGAGGTTCTTGAAGCAAACCAGAAACATGAAGTAAGTAATAAAGCTCAAGAAGTATTGCGAAGAATTGGCCTTGGGTTGCAGAGTAATTCATCTTTGTCATCAGATGATTTACTGGTCTATGTCTATCATACACTGAAAGATTTGAAATCTCATCTGAAGAATAAAGATTCTAAAAACGAAGAAGTAAAGAACGAGCAGAAAAGCAGATTAGTTCATGAAGATATATATTTGGTAAAGAAGGAGCCTATTCGTGGAAAGAAGGTTGTAGAAAGTAGTAGAAAAGCAAATATGCATGTCGTTGCAGAATTCGCTTTGCAGAACCAACGGTTGCTACCATCGAAAGAAGAGCATAGAATGATGCTAGATCCATATGTTAATGTGCTTATTGGTTGTATCAACTCAAAATACAATCGGGTTATTATTCTGGCAGTTAAATCAATTACCCATTTGTTACGGTTCCCATTACCATCATTTCAATCCAGCACAAAGGATTTGGCGTCTGCCTTATTCAAGCTGCTAAAGAACTATGCAAGAATTGGTGCTGGAACTGGTGAAAACTACGAATTAGTTCTCTGCTCCTTCAAGATTCTTCTTGCTTTTGTTGAAGAAGATATTTATGATTACACTCGACAAGCCACGGCCTTCCCTATGTTAAAGGCGATTTTATCTCGAAAGTTGAATGTGCAAGAAATAAGCaatataatgaagaaaatcGGTGAAATTTCAGTCACAAGTGAATCAGAGTCGGTCCAGTTGCAGTGCCGTCAGTTAATGTTACAATATTTGATGGATTATCCTCTTGGAAAGAAGATTGAGCGCCTTCTTCATTTTTACATATCACATCTCGAatatgaaattgaaaatggcCGAAAATCCTCATTGGAAATGATGGCCTTGATATTCAAAAACTTTCCTGAGAAGCGTCTTGGTGAATATTCAGATTTGTTTTACTTTCCATTGGCCATGAGACTTGTAAATGATGAGTCACCATTATGTCGCAAGCTCACAGATGCTGTCTTAAGACTGTTGTTGCAAAGGCTTGAATCAGAGAAAAGAACAGAGTTGTATGAATTGACTTTGAACTGGCTAAAGCAGAATAAGACTGCTGTAAAGAAGCTTGCGATTCAGACAATTGGAATATTCGCTGAGGTAGAAAAGGCTGCATTTGAGAAGAGAATCATGTCTTTAATGCCAGAAATTAAGGAGATTGTAAAGCCCGATTTAAATGATGAAGATGACGAGGAAGAACTCGATGACTTAAAATCCAAAGATCATTTGCTTTTTAACGCATTGTCGTCTTTGATGAAAATCTTGCAAAATTGTGGTATTCTTAGAAAACCTACTTACCAAGAACACCTTACTGAAATATGGGGCAGTGTTCAACATCATTTACAACACGCACATACATGGGTTCGATTGGCCTCATCTCAGTTATTCACTCAGTTGTTTGCTGCTTGGGAACCAGTTGAACTTGTTAAATCTTGGAGGAAAAATAAGAATGGAAGTTTTATTGGAGGTTATCTGATCGCAAAGCTCCCTAGCAAGATTGCAAAAAATTTGATTTACTTGATGAAAGTAATTAACCTATTGAACGAGGATGAACTTCCTAGTCAGAATAAAGCAGAAATTTCCTGCGATGAGTTGAATGAAAGAGATATAGACGATGAAGGAAAACTTCCAACTTTACATTGGCTTCTTATGAAACTATCTTATTTGGCAAGTTACGAAGCgtcaaaagaacaaaaagtcCATGTCAAGGCTGTTGTCAACCCAGAGAAATTCGcgagaaagaaacaaaagaaaaatttggttAAAAGAGATCAAAGGAAGCGCAAGTTGGCTGAAAAGAAGCCTTCATTGGTGAAACACAGTAAACGAGCAAAACAGGATTCAGTTGGAAAAGGTGGCTTTATTTAG

Transcript

BRAKERKYLT00000014985

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75691	Small subunit processome component 20 homolog OS=Homo sapiens OX=9606 GN=UTP20 PE=1 SV=3
Q5XG71	Small subunit processome component 20 homolog OS=Mus musculus OX=10090 GN=Utp20 PE=1 SV=2
O60055	U3 small nucleolar RNA-associated protein 20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp20 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002640 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07539 all species →	UTP20_N	U3 small nucleolar RNA-associated protein 20, N-terminal	Domain	Interproscan
PF20416 all species →	UTP20_C	U3 small nucleolar RNA-associated protein 20, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052575 all species →	Family	Small subunit processome component 20	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR011430 all species →	Domain	U3 small nucleolar RNA-associated protein 20, N-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR046523 all species →	Domain	U3 small nucleolar RNA-associated protein 20, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17695 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000014985.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.