Gene detail

Detailed information of BRAKERKYLP00000015003.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_032222762.2, tetratricopeptide repeat protein 21B isoform X2 [Nematostella vectensis]
Species abbreviation MPAPU · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000015003

ATGGCTGCAACTGATTCGGTTACACTGgcgaaaataaatCACTGTTGCAGAGAGGGATACTACAGACAGCTCCAGGATATATGTCTTGAATCTTTGCAGAAATATGGCCATGACCCAGTTCTTGTATTCTGGAAGGCCTTTGGAATATTGATGGAAGGACAAATATCAGAGGCTATTTCAGAACTGGAAGGGATAAAGGAAAAGCGTGATGTCATCCTGTGTTCTTGCATGGCTTTGATTATAGCACATAAGCGTACAAAAATGGTGGACAAGGATACTGTAAAGCAATTGGAAGCAAAACTGAAATCTGAAAGGACAACTTGTGGTGAAACAGCTTTATATTTTGCTGGAATGTTCTTATTTCACAGTGGTAAGCCAGATAAAGCTAGAGAATATATTGACAGAATGTTGAAAATGGCACCTCAGTCAAAAGAGGGGCTGATATTGCGTGGATGGATAGATTTGAAATCACAAAGAGAGCAGTATAACAAGAAAGCAGTTAagttttttgatgaaattcttAACAGTCCTCAAGCTCCGAAAGAAATCGATGCAATTCTTGGAAAGACTGAGTAcatgaagatgaaaaataatttcAGTGGGGCACTTGAAATGACCAATCAGCTTGTGGTTTTTTATCCGGAATTTTATCCAGCGCTAGTTGAGAAAATGCGCTTGCAGTTGGCTCTTCAAGACTGGGAACAGGCCTTAGAAACTGCTCAAAGAATATTAAGATCGGAACCAAATAACATTGAGGCAAAGAGAATGGCCATATTGTTTCTACTCTGCAAAGATGGAAAACATCCTGAGGCAGTGGACAAGATCAGTGACTTGATTCAGACTCTTGACAGAGTAGAGCCAAATAATCCTTACCTGCATTGCAGCCTTGCAACTGGATTTGCTCGGGTGAGTGGTCGTAATGGGATGGTTCTTCAACAAACATTAACAATGCTAGATCGAGCAAAGTCATCATCGTCCTCTTCAAAGGCTGATGTGATTAATGAAATTGGATACGAGACTGTCATGACAGGAAAATATAAAGATGCAATGAAGTACTATAAGCAAGCAATGAAAATTGATGAATCCAGTGTTCCTGCATTGACTGGGATCATACACTGCCAGATCTTAGAGGGAGCATTAGATGATGCAGAACAGCAGCTTGACTTTCTTAATGAGATTCAACAGTCAATCGGTAAAGCTACGGACATATTGTATTTGAGTTCTCTTTTGGCGTTAAGGAAAGGGAAGCCTGTTAGTGAAGTTATTGCTTTGCTAGACCAAACGATTGAGTCTCACTTTGGGAGCCTAGGGGGACTGCCTCTTGGGTCGCTATATTTTGAAAGATTAAATCCAGACTTCATTCTTGAGTTGGCAAAGATCCTTCTGCAATTTGCACCAAACGAGCCTGCAGCTATTGGACAGCCCGTTGCGCCAGTTCTAAACAAAACATTAACCATTCTTGATCCTATTGTGAAAACTGTACCCGGTCTGATTCAGGGTCATTATTTAATGGCGAAAGTGAAGTACGCCTCGGGCGATGTGGATGGCGCCAAAGTTTCACTGAATATTTGCCTAGATTCTGATCCTACATTCTCCGAAGCCCATCTGTTAATGGCACAAATTCATCTGTACAAAGGAAATTACCTAGCATGTGATCAGTCTCTAGAGAACGGCCTTAGCTACAACTTTGAGgTGCGGAACAGCCCACTGTATCATATAATTAAAGCAAGGGCTTTGAAGAAGCTTGGCAAAACGGAAGAATGCTTGAAGACTTTAAAAGAAGCAATGTCTCTTCCAGCTCTCAGGAAAACAAATCAAGGTAAAGGGGACAATCTGACATCCATTACAACCAGTGATAAAGTCACATTATATTTGGAATTGGCTGAAGTTCACCGGTTGTGTGGCCAACAGCATGAAGCAGCAAAAGTGATGACAGATGCAATTCATGAGTTTCAAGGAACCCCTGAGGAAATACGAGTCAACATTGCAAATTCCGACTTAGCTCTTGCCAGAGGTGACGTGGAACAAGCACTAACAATGCTGCGACAGATCTCTCCAGAGGATAGGTAA

Transcript

BRAKERKYLT00000015003

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z4L5	Tetratricopeptide repeat protein 21B OS=Homo sapiens OX=9606 GN=TTC21B PE=1 SV=2
Q0HA38	Tetratricopeptide repeat protein 21B OS=Mus musculus OX=10090 GN=Ttc21b PE=1 SV=1
Q6INC1	Tetratricopeptide repeat protein 21B OS=Xenopus laevis OX=8355 GN=ttc21b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002982 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07721 all species →	TPR_4	Tetratricopeptide repeat	Repeat	Interproscan
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR040364 all species →	Family	Tetratricopeptide repeat protein 21A/21B	Interproscan
IPR011717 all species →	Repeat	Tetratricopeptide TPR-4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14699 all species →	STI2 PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030991 all species →	Cellular Component	intraciliary transport particle A	Interproscan
GO:0035721 all species →	Biological Process	intraciliary retrograde transport	Interproscan
GO:0061512 all species →	Biological Process	protein localization to cilium	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000015003.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.