Detailed information of BRAKERKYLP00000015024.1 in Mastigias papua

Genomic Location: :...
NR annotation: AAB59967.1, alpha-1 type II collagen, partial [Gallus gallus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9XSJ7Collagen alpha-1(I) chain OS=Canis lupus familiaris OX=9615 GN=COL1A1 PE=1 SV=1
P02453Collagen alpha-1(I) chain OS=Bos taurus OX=9913 GN=COL1A1 PE=1 SV=3
P02452Collagen alpha-1(I) chain OS=Homo sapiens OX=9606 GN=COL1A1 PE=1 SV=6

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF01410COLFIFibrillar collagen C-terminal domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050149FamilyCollagen superfamilyInterproscan
IPR000885DomainFibrillar collagen, C-terminalInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19721COL5AS; collagen type V/XI/XXIV/XXVII, alpha-Glycosaminoglycan binding proteinsko00536deepkoala

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