Gene detail

Detailed information of BRAKERKYLP00000015379.1 in Mastigias papua

Genomic Location: :...
NR annotation: XP_047136121.1, transcription termination factor 2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKYLT00000015379

ATGAAAGCAGGAAAGGAGAATGAAAAATTTGTCTTTCCGGATGCTGGTTTGCAGTGTGATGGTGAAAAAATCACTTCTTCCATAGAAGACAAACCTCGGGATCATTTGACTTCAACACCTCTTGAAGCTCAGAGCAAGGAAAAGGATGGAAATACAGATGGAAACTTCTATCCAGAGCAAGACATACAGTCACTTCACCCAAGTGATATTCAAGCTTCTAGTGTAGTTAGCTCTGGTAGTGTTAGTCATGTTAGTAAAAGACATCCTCGTCAGATCATACTTATAGACGACGATGAGGAGCATCAAGACATTGAGATTGGTATACAGTCGGTTTCTAGAACGTGCAATTCACTAGTGAGCAAACCAGAAATAGCCGAAGATAATGGAAAAACTTGTGATATAACTGACTTCAAAAGCCACGAAGTGCTGTCAAAACAACAACGAGCACTGGAAATGGAGCTTGAAACTAGAAGGGCTGATTTGAAAAGAGTTAATGTTCAGTTGCTACCCGATATGGGACAGCGCCTGACTACTCAAATTAGAGCACTTGAAAGAGAACTGAATGAAGTTAGAAGACAGAGAATTGAAGCAAGGAGTATCCAAGAAAGGGGTCTTCACGTAGAAACGAATCCAAATCAGAAACAAGGAGCATTTAAAGTCCCAGAATATTTCAATAGGCAGAGACTCTACGGAGGAAGAATGACAAGTGCAGACCTGAGGCAGGTTGGCAGGGTTACCAGAGATGCTATTGAAACATTACACAGGTCTTTAGAGAGTTGCCCATCGGAGACCACTGAAAGCGAGGACCCAAATGGCCTTTTGGTAGAATTAATGCCACACCAAAGACAGGCTCTGGCATGGTTGCTTTGGCGGGAAAAGCAAATACCATCTGGTGGTATTCTCGGTAACTCATTTAAACCAGCTGATGACATGGGCCTTGGGAAAACACTGACCTCAATTTCACTTATACTGAAAGATAAGCAAATTGGTTATGCAAAGAAAGCAAGCATTCCATCGGATATGAGAGACTCAGCTGGCACCCTAATTGTCTGTCCGGCATCACTAATACATCATTGGCAGAAGGAAATTGATAGAAGGGTAAAGCCATTGCAACTGACTGTTTGCCTTTATCATGGTCAGATGAGAGAAAGCAATGTTGAGCGGCTCTCTCGATATGATGCTGTTCTCACCACATACAGTATAATGGCAATGGAGATAAAAGATCTAATTGAGACAGATACAGGCAAAATGAAGGCACAAAGTTGGCTTAACACGAATGATGCACCACTTGTCTCTCGAAAGAAGAGAAATTGTAGCAGCCTTTTGAGCCGAATTCATTGGCGGAGGATTATTTTGGACGAAGCTCACAACATTAAAAATCCTAAGTGTGCAACTTCAATTGCCGCATGTTACTTAGAGACAGAGAGCAGATGGGCTTTGACTGGAACTCCAATACAAAATGATACGAAAGATCTTTATTCAATCATTAAGTTCTTAAGGTGCTGTCCTTTCGATGAAGTCAAGGTTTGGAAAACATGGGTTGACGACAAAAGTAATAGAGGTAGAGAGAGGATGAGTACTCTTGTAAGGAGCCTCCTCCTCAGGAGAACAAAGCAGCAGCATTTGGTAATTCGTgcatatttctttattatttactCTACTGCCCCAGAAGCAAGCTCATGGACATGCCTTCCTTCACGAGCTTCCATGATTCACTCAGTGACACTTGAAGCCGGAGAAAAGGAAATCTATGATCTGCTTCAGAGTTATTCCAAAAATATACTGACTGCCTACTTAGATAGCCGAGGTAAACTAAATACCACAAAACTGGGGAATAACGGCGAAGTTGCGAATGAGAGAAGACTGAAGCATCAAACAGATAAATTGATATATGGAAAGGAGCCGGAAGAACTTCTTGAGATCCTTGGGTTGCTTAATTACAAAGTCAATGCTGGTTCTATTTTGGTAATGGTTTTGCGGTTAAGACAGTGCTGTACTCATCTGAGTCTGATGCGAGAGGTTCTCGATAAGACTGAATGCAAAGAAGAAGGCATTGAAATTCCACTTGAGGAGCATATGACCAATTTGTCAATTATGGACGGAGATCAGCCCACAGTTAGTAATCAAACATTCATTATTCAGCATTCTTCATTGATTTGCTTTAAATATGTTCCTCATATGTGA

Transcript

BRAKERKYLT00000015379

Protein

Uniprot

Uniprot term	Description
Q5NC05	Transcription termination factor 2 OS=Mus musculus OX=10090 GN=Ttf2 PE=1 SV=2
Q9UNY4	Transcription termination factor 2 OS=Homo sapiens OX=9606 GN=TTF2 PE=1 SV=2
P34739	Transcription termination factor 2 OS=Drosophila melanogaster OX=7227 GN=lds PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050628	Family	SNF2/RAD54 Helicase and Transcription Factor	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45626	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15173	TTF2; transcription termination factor 2	EC:5.6.2.-	Transcription machinery	ko03021	deepkoala