Gene detail

Detailed information of BRAKERKYLP00000015426.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: EDO45527.1, predicted protein [Nematostella vectensis]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000015426

ATGGCATCAAAAAGAAAGTTGAAGCATCCAAGCAAGCTGATAGAAGAAAAAAGGCAATGCTTGACGTGGAGCCTAAATGATGCATGTCAAAATGCGCAGTATGGCGTGCAGCCTTCATCTTCGTTTTCATTAGAAGAAGTGCCCTGGAGAGACCAAAAGAATAACAGCTCAAGTACTTCTATTGATGGAGCTGCAAGGGCATCAGAGCCTGTTACTGCTAAAGCTAAAGGTAGAGATGATTGTTTGCCGTTGCTGAGTCTTAAAATAGAATGCTCGAAGTGCATAAAAAGTAAGCCTGTAGCTTTGAACAGCTGTATTGGCCCTAAagtctttcaaatgtttttgacAAAGGAAGGAATAGAAAGGGATTGGAAGTTAAAGTGTGATCTGTCAAATAATGGAAGAATTTCTGAATGCTTTTGTGGCAAAAGGGATTTCTTACTTAAGGTATATCATGATTATGGAGCGTCTAATAGTTTTGAGGAAGACAGACAAAGAGCTGAGATTCATTTGTTGACGAAAGTACTATTTTCAGAAGAGATGGAAACTAGTGAATGGACGTGGGAAACCAAACGAAATTATTATAGTCTACAGGTTTGGTCGGGTTATCTTGTGCTGCCCAGAACTGTATTGTCCAGTATAAGCAAGATGGCCCAAGACAAACAACTTACATTTGTTGTAAACCCAGGTGATTTAGCCAATACTGACCTATGCATCCATGCGAGAATTGTTGAAAAAAAATTGGGAATGATGGCAAGTGATGACACAACTGTTAATAAAATGAGCTACAAActtcatatgaaaaatattttgagttatttttatGGTATATATGATGAGGTTGTATATGATAGCTCTGAGAAGAAATTCTGCTTCACTGCAAATGAAATACCTGCTCTTTACAACTATATCAAAGAATATCACAGTAGAAGTTTTAGCATAGAATTGACTGATAAGGAATCTTTAATTGGAGATGATTACAGAGAAGAGGTGGCTTCAAGTGCCTCAGATGAAACTAGAAGCTGTGTCACATCTTTAGATCAAGGTACCTCATTGGAAAGCTTTTCAGAGTCTGTAAGTGTGAAATCTGACATTGTGGATGATTATCAAAATGAACATGATAttcagaaatttgaaattgatgaaataAATGGAACTGCCAATGGGTTGGTGATTTCAAATCAAAGTATTTTTGGCATCAAAGTGGATCTGTTGATCCCAAAGTTAAGGAAATATCAGTATGCAGCTGTACAATGGATGATTTTtaaggaaaatgaaacagagtATGAATTAGGACCAACAGAGCATGTCCTTTGGACCAAATTGACTGTATTTGATGAAGAGAGTATATATTACAACAGATTTAGCAGCAGAGTTTGTTCAAAACTTCATATTTTGCCCTTACCCCAAGGAGGAATACTGGCTGATGAGATGGGGCTTGGTAAAACTGTGGAAGTCCTTGCATTGATTTTGAAGAATGGCAGGGGTACAAAGTTTAGTTTGTCAGACTTTCACACATTAGACCCAGTTGAAACAGAACTGACTAAAATTGCAGAAGATAGTGACCAAGAACTACCTTGTTGCTTTTGTGGAAGAAAAATAGGATATATCAGAAGAAATTGTTTTAAATGTAAAGTTCCAATGCATCTTAGATGTGATGGTACAATGGGAAAGAATGTCAGGAAAGTTCTTTGCCCTATATGTGGAACAAAAGAGGTTATCAAAACACATTGCACACTCATTATCTCACCTGCTACCATTGTAAATCAGTGGATTGAAGAAATACAGAAGCATGTTGAGAAAGACGCAATAACATATTTTTTGTATTTGGGAGTAGGAAGAGGTGGATATATACAACCATCAGTTCTTGCTGAGTATGATGTCATAATAACCACATATGAAACACTCAACTCAGACTTTCATCATGTCAAGACTGAAGAAGGAAGAGATCGAAAATTAAGAAATCGAAAGAAATACATGGCTCTTCCAAGCCCTCTTGTTTATCTTGAGTTCTGGAGAGTTTGCCTTGACGAGGCCCAGATGATACAATGCCCAACCACAAAATTGGCTGAAATGGCATTAAGAATAAGTGCTGTTCATAGATGGTGTGTCACCGGTACACCACTACAAAGAGGCCTCGAAGATATCTATGGGATGCTGTTATTCACAGGCGTCTATCCATATTGCATCAAGACTTGGTGGACTAAACTCCTTTATCAGCCTCTTATGCATGGCAACTCAAAGCCTTTGTTTGACATCCTCGCTCGTGTAATGTGGCGAACTGAGAAGAAAGATGTATTGGACCAGATAAATCTTCCAGACCAAACTGAGACCTTGAAGTTGTTGAAATTTACGCCAGTTGAATGGCAATTTTACAAAAGACAGGAAGAAGTTTGTACTGCAACGGCTTTGAAGGAAATCGAAAAATGGACAGAAAAAGAGACAATCCTAAGTACATTGGACAAATCAAGCTTGCATAGTCTTCTCGCTCCGTTGCTAAGACTCCGCCAAGCCTGTTGCCATCCACGTGCTGTGCGAGATGGAGTTCTTGGAATACATAAAAGTCACCTGACAATGGACAAGTTGCTAGAAGGCCTGAAAGCAAAAGCTAAATTGGATTGTGAAGAGGCACACCGACAAGTGATGTGTGCAATCAATGGCCTTGCAGCCATCGATATCATCGAAGGAAAGTTTGAGGATGCCGTTACGAAATACCGAGAAGCAATTCAGTCTTCAGCTGCACATAAAGATGTATTCAGAACTGATCTCCTTCAGAAACTCCACACAGTGAAGAATCTTTCTTTTGCACTCACAAAGTCAACTAGTTGTTCACATGCTTTATCAGATGACAATCTAGATACTGAGGCGAAAGAACTTGCTAGAGAATATATGAAGAAATCAGAATTACAACTGCAGACTGCGGAGGAGAAAGTTGGCTCAATGGAGGAGAGTTTTGAACCATTTAAAGGAACAATCGATTGGAAAAATCCATGGTGGATTGAGTTGATTCATGATTTTGAATCAACTACGGTGCCTGGGAGAGAAGAGGGGTTAATCACTAGAGTGAAGCAAGAACTTAGTACACAGCTGCACACTTGTACGATCATGGGAAGTAGGTGTGTATGGCTGCCTTTAAGTCGGGTTGTGGATGGGATAATAGTCATTGAGTTAAATGAAGCAAATGGCCAGGATTGA

Transcript

BRAKERKYLT00000015426

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TPQ3	E3 ubiquitin-protein ligase SHPRH OS=Mus musculus OX=10090 GN=Shprh PE=1 SV=1
Q149N8	E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens OX=9606 GN=SHPRH PE=1 SV=2
Q9UTL9	Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC144.05 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003108 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21325 all species →	SHPRH_helical-1st	E3 ubiquitin-protein ligase SHPRH, first helical domain	Domain	Interproscan
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048686 all species →	Domain	E3 ubiquitin-protein ligase SHPRH, first helical domain	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR052583 all species →	Family	ATP-dependent Helicase/E3 Ubiquitin Ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45865 all species →	E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000015426.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.