Genomic Location: chr20:5234698...5242717
NR annotation: CAH3158138.1, unnamed protein product [Porites evermanni]
Species Mastigias papua · all data for this species · gene families
| CDS |
| BRAKERKYLT00000015716 |
| Transcript |
| BRAKERKYLT00000015716 |
| Protein |
| BRAKERKYLP00000015716.1 |
| UniProt accession | Description |
|---|---|
| O94442 | Cytosolic Fe-S cluster assembly factor nbp35 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nbp35 PE=3 SV=1 |
| Q6P298 | Cytosolic Fe-S cluster assembly factor nubp1 OS=Danio rerio OX=7955 GN=nubp1 PE=2 SV=2 |
| Q3KQF0 | Cytosolic Fe-S cluster assembly factor nubp1-A OS=Xenopus laevis OX=8355 GN=nubp1-A PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001335 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02374 all species → | ArsA_ATPase | Anion-transporting ATPase | Domain | Interproscan |
| PF10609 all species → | ParA | NUBPL iron-transfer P-loop NTPase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR025723 all species → | Domain | Anion-transporting ATPase-like domain | Interproscan |
| IPR019591 all species → | Family | Mrp/NBP35 ATP-binding protein | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR033756 all species → | Family | Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23264 all species → | NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0016226 all species → | Biological Process | iron-sulfur cluster assembly | Interproscan |
| GO:0051536 all species → | Molecular Function | iron-sulfur cluster binding | Interproscan |
| GO:0140663 all species → | Molecular Function | ATP-dependent FeS chaperone activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03593 | mrp, NUBPL; ATP-binding protein involved in chromosome partitioning | - | Mitochondrial biogenesis | ko03029 | deepkoala |
Genes whose expression across the transcriptome samples of Mastigias papua tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Mastigias papua, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
