Detailed information of BRAKERKYLP00000015878.1 in Mastigias papua

Genomic Location: chr20:7445508...7447361
NR annotation: XP_001637908.3, 2',5'-phosphodiesterase 12 [Nematostella vectensis]
Species Mastigias papua · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6L8Q72',5'-phosphodiesterase 12 OS=Homo sapiens OX=9606 GN=PDE12 PE=1 SV=2
Q08DF72',5'-phosphodiesterase 12 OS=Bos taurus OX=9913 GN=PDE12 PE=1 SV=1
Q6AXQ52',5'-phosphodiesterase 12 OS=Rattus norvegicus OX=10116 GN=Pde12 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006892 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21171
all species →		PDE12-like_N2',5'-phosphodiesterase 12-like, N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036691
all species →		Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR048821
all species →		Domain2',5'-phosphodiesterase 12-like, N-terminal domainInterproscan
IPR050410
all species →		FamilyCCR4/nocturin mRNA turnover and transcriptionInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12121
all species →		CARBON CATABOLITE REPRESSOR PROTEIN 4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000175
all species →		Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0000288
all species →		Biological Processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decayInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19612PDE12; 2',5'-phosphodiesteraseEC:3.1.13.4
EC:3.1.4.-
Mitochondrial biogenesisko03029deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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