Gene detail

Detailed information of BRAKERKYLP00000016315.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_044183083.1, LOW QUALITY PROTEIN: fibronectin type III domain-containing protein [Acropora millepora]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000016315

ATGATTGGAACAAGTAGGTTTTTGAATGATTTGGTAAATGAACAGGTAAAAGAGTTCAAGATAATTGGGCGCCATTTGCCTACTGATAGCCAGCCAAAACCTCCTCTTTATCGAATGAGGATTTTTGCCAAGAACAAGACTGTAGCAATATCAAGGTTTTGGTACTTCTTGTCTCAAGCAAAGAAAGTGAAGAAGGCCAGTGGGGAGATTGTCTGTTGTGAACAGATCCATGAAAAGAACCCCTCATTTGTTAAGAACTTTGGAATCTGGTTGAGATATGACTCCAGAAGTGGAACCCACAACATGTACAGAGAGTACAGAGATACAACTGTTTGTGGTGCTgtagatcaatgctACATGGATATGGCTGCGCGTCACAGAGCCCGTGCATCTTCCATTCGTATAATGAAAGTTGAAGTTATCCCGGCCTCCAAGTGTAGAAGACCAAACATCACCCAGTTCCACGTAAGTATATCtttaaaatgttttgttgttgcagAAGATGGAAAACTGATATATTTCTATGTGGATATGGATATGGAGATAAGTAGCAAACTTGCTTGGCTTCTTTTAGTACTATTTGATCTGGTTGTAATCAGTTCAGGAACACCACCCCAGGTGGATAGTTTTGCAATCAGAAATCCTATTCCCAGAATTGAGGATGACCTGACACCTGTGACAATGTACTTGGACTGTAGTGGCTCTGGAGATCCACCACCAACATACCAATTCAAAAGAAACAATATTATCATAACAGATGCATACTATGACAAAAGGTTGACTGTGTTAGATAATACTTTGACAATCAAGAACCTCAACACCTCGGATGGTGGCATCTATATCTGCTTAGCAACAAATAGGGATGGCACTGTTTTAAGGGAAGTTGATGTGAAGATAAGAGtGCTCGGTCAGTTTGCTCCTGAATCACGGTCAGAGAGAGATTCAAGGAATCACGCAATCACCCTGtacaaagaaacaaagatatCATGCCCAACACACAGTTACACATTCCCATCCATAATTGAATGGGGCAGTGTTCCCAGTGCTGACAATCCACGAGCTCGTATTGTACGAATACCCATCAGCAACCGTGTGTTTTATGGCAATGATGGCAGCTTGAACTTTGCAAATGTTCTGCCTGGAGATATAGAGTTGATAAACAATGATTACCGTGGAATTCAGTGCTTGCTCAGTGTTGGTTTGGGCACAAGGGCATCAAATAGGTTTCAACTGAGACAGGACAATGATTTTACATCTGATTATACACGGGAGCCTAATTTTGCAACTTCTATGCCTGAAAATACTGTTATCTTTAAAGATCAAGAGTCGATTTTTACTTGCGGAGGTTACGGACGTCCTACTCCGACTGTCGAATGGTACAAAGATGGTGTTAGAATACAAAATTTTGACAACACAGGGAGGACAAATTTTGCTGGTTACACACTTAGCTACAACGATGTTGAACTGAAAATTGTTCGGCCTCGTAAAGAAGACGAGGGCGTTTTCAGGTGTTGGATACGAAATTCAAAAGGTGCAAAGAACAAGGACTCGAATCTTTTGGTGCATTATAAGCCGTTTTGGTTGAAGGAGATAAAGGATATATCCTTACCGATGCAAGCATCGACACTTTTCAATTGTTCTGCGGACGCAAAACCGGCCGCAACTTATGAATGGTACAAGAATGGCACTGCACTAACAATATCGGACCATATAAAGATCGACCGTGGGGTGTTACGAATTGTCAATGCTAGACTCGAGGACAAAGGGATGTATGTTTGTATGGCAAGGAACCCAAATGGGACAATTACAACACAGTCATTCGTCGATGTCCAAGCTGTGAAACCACAATTTGTGGAGCGGTTACCAGATCCAATGTATTTGTTCCGTGGACGATTGAGTAAAATACCTTGCAATCCTAAGGGTGGACCTATTCCTACTAAGACATGGTACAAAAATAATGTGCTCATTAATCTACGACTGCCCAGATATACGCAAGATGTGAACGGCACTTTGATTATAGATAAGGTTGATGATACAGATCGTGGACAGTACAAGTGTGTAGCTGTGAACACAAAGGGGCGTGCTGAAATGATCACAAACGTACTTGTTGTTGCCCCAACGGAAATTGTTGTGGCACCTCAAGCCCCAAACGGTGGCAGCACAATCAAGGAGGGACGTGATCTTGTCCTCGTTTGTAATGCAACTTACGATCCCAGTCTCCAGCTTCGTATTCACTGGGAGAAGGATGGAGAGCGAATCAAAACATTCAACGATCGTTTCATGCTGGAAAGGAGAGTCGGTGATGCTGCGCCCAGGCTTCTCATTATAAAGAAACTCAAATTTGAAGATCGGGGGCAATATACGTGTAAAGCGTACACAATTCTCAGCACAACGGCCAATGTCCGATCAGAAGATGTATCAACACATTACCTGTCCGTATCAGCTCCACCTGATGCCCCGACGTCTTTGAGTTTTAAAGTTAGTTGCCAGGACTTCAAACCACTTTTGGAATGGCGTGTTGGCGAAGCAAACAATGACGCAATGAAGTCCGTCAAAGTTGAATACACTTCTGATTATCCGGATGATGCTAACATATGGTACACGGCTGGCAGTGTGTTTGGCGAAAGTGTCAACCAATACCAGTTTACAAATATACCAGGCAATGCGCGGCTTAAGTTCAGGGCGACAGCTTACAATCAAGTGGGTGCTAGTCTGGTCAGCCTTCCGACAGACCCTCTGTTATGCATCACTCCACCCAAACGACCTGAAAACAATCCTGTCAATGTTTCCTTGGTCGTTGTAGGCCCATCAGATTCGACTATTGTCTGGGGGAGAATGAAGATTATAGAACAGGAAGGAGTGGATTTCAAATACGAAGTCAGCTACAAAGTTGTTGGGTCAGCTAATTACATTCGACGCAATGTGACGAATACTACGCTCTCACTACCTATTAAGACAACCAGATTCACGCAATACGAAATATGCGTCCGTGCTTACAACAACAAAGGACCATCAGTGAAACTTCCCAATTGTATCAGAGCATACTCATATCAAGCAAATCTAACTGCGGCCCCAACTGGCCTACGACCCACTAAACTTGGATACACAGATGTTGATCTCACATGGAATACAGTGGCTTACGATCCCACCGTAAATAATGTCGAAGGCTATAGGATATACTATTGGAATATCACAAAGCCTTACCGCCCAGTTATTGTCAGGGCAGAAAAGAAACGTCGCCGGCGACGTGCTATTGTTTTCGGTGCCTATCCAACCGAACAGAAACCGTACATGGTAGAGTACCGTGTCGGCACGGACATAGACAACCTCAAGAATGTGTCTGGCCTCATTCCCGCTATTAGATACCGGGCTTACATCACAGCCTTCAATAGTGCAGGGGAAAGCCCAAAGAGTGCGACAATTGTCTTCGAAACACGCGTAACAAAATCTGGTATTCCTGATAACATCAAAATGACAGTGTATGGCGATGTTTTGCACGTCCAATGGGAAGCGCCATTGGAACCGAACGGTATCACCACGGGATATATCTTGCAGCTTGATCCGAAGAGAGATTTTCAAAGTAGAAAGAAGCTCGATCATATTGTAGTTGATAAGATCGACCGAGAGTATTACATACGTGGTATGACCCCGTGTAAATTTTATCAGGTTAAGATTGCTGTTATGAATCAGAATGGCGAGGGACGGTATTACCAGCGAAGAATGGCTGTCAGTATGCCAGATAAGCCTGGGCGTCCTAATTTGCCTAGAGTTGTGCCGTACGATGCAAATGCCGTTAACATCACATACAAGTTACCTGGTTATGGTGGCCTACCAGCAAGTTTCACAGTTTATTATAAGCATAAAGATGGGGCGTATTACGATGCCGATCCTTACTTCAATTCGTTGACTGTCAAAGGTGACAACTTTCAAAAGCGGCCTTGGCAGACTGTTAAGGGCTTGCCGGAATTGGAATATGCTTTCTGGACAGTTGGTCATAACCATATGGGAGACAGTGTAAACAGTGATCGTGTCATATCCCAAGTTATGCCGTATACTAGGCCTGGAGTAAGAACAACAGAAGGGCCATGGTATTCAAGCAGGTGGTTTGTTGGTGCTTTGGCATGTGTCATCTTTGTTTTGATCTTGCTGTTTGTAATCATCCTTCTTGTCAACAAGAGAGGCAGTCGCTATACTGTCGCGTATAGAGAAAGAAAACGTGCTGGATGGAATGGTGCAGCGACAACTGAATTCCATCGTCTAGAGAAGGAACCAATTGAAGAGCCGACAGTCGCTACTACAGAATTGAACGAAGTTGAATCGGCTCCACACCACCCACCTGAATATCAAAGCCAAGGTTCAATTGAAAAGAAGCCACCGAGCGATGACATGGAGGACCAGGACAGCTTCGGTTATGATTACGGAGAGGATTCCCGGTTCCAAGAAGACAGCTCATTCATTGGGCAATATGGAGAAGAGAAAAGGCGAGAAGCtgaagaagaagaggaggaaAGTGATGAACCAGAAGATGCCACGTTTGTGTAG

Transcript

BRAKERKYLT00000016315

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8VIW9	Fibronectin type III domain-containing protein OS=Acropora millepora OX=45264 PE=1 SV=1
G1TTY7	Large ribosomal subunit protein eL20 OS=Oryctolagus cuniculus OX=9986 GN=RPL18A PE=1 SV=2
Q3T003	Large ribosomal subunit protein eL20 OS=Bos taurus OX=9913 GN=RPL18A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007316 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF01775 all species →	Ribosomal_L18A	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13882 all species →	Bravo_FIGEY	Bravo-like intracellular region	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR023573 all species →	Domain	Large ribosomal subunit protein eL20 domain	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR028877 all species →	Family	Large ribosomal subunit protein eL20	Interproscan
IPR026966 all species →	Domain	Neurofascin/L1/NrCAM, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170 all species →	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000016315.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.