Gene detail

Detailed information of BRAKERKYLP00000016936.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: KAJ7383604.1, Ubiquitin carboxyl-terminal hydrolase 47 [Desmophyllum pertusum]
Species abbreviation MPAPU · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000016936

ATGGCACCCGGTAAAAAGGACCCAAAAAGTGAGAATGTATTGATGGGCCTCGTGCCTGTTGCCAGGAAGGAAACAGAAAGTGACACGGAACGAAACATTGTTTGTGTAGTTGATGCTGAAGGTGAAAAGTTTGTTATAAATTTAGACAGAAAGACGACAGTGATGAAACTATATAAAATTGTGGCTGAGAAGGCTAACTATATGTTAGATTCCTTCTTGCTGTTGTTTCTGAAGACATCGAATGATGGAAAATCAAGTGAAGAGGTCATTTTAGATAATTCACATGAGACTACTCTTGGGGACGTGGTTGGAGGTGTTAAATCAAAGACAAAGGATTTTGCAGTTAAACCAAAAGACGGCAAGACTCTCATTAAAAGAGTGCAGCAGGCAACTGAAAGTGCAGATGACAGTGATGCTCCTGAGACATTGGTGAGCAGCCTGTTTGAAAGGGAAACATCATTCTCCAACCAAGAAAGTGAAAAGTTCAAAGGAATATCTTTTTCAAAGTCAGAATCAGGTTTTGTTGGTTTGATTAATCAAGCAATGACATGCTACTTGAATAGCCTCCTACAGACATTATTCATGACACCAGAGTTTAGGAATGCCCTTTACAGGTGGAACTTTACAGGAACAGAAGAAGAAGCCTCAAAGAGCATACCGTTTCAGTTGCAGAAGCTCTTTCTGAAATTACAGGTCAGTAAGAAGAAAGCTGTTGAAACAACAGATTTAACAAGAAGCTTTGGTTGGGACAGTAGTGAAGCATGGCAACAACATGATGTGCAAGAGCTTTGCAGAGTTATGTTTGATGCCTTAGAGGAAACATTGAAGGATACCGATCAGgCCAATCTTATCAATCAAATCTATCAGGGTAAGATGAAGGACTATGTAAAATGCCTTAAGTGCTCACATGAATCTGCAAGAAATGATACATATCTTGATATACCATTAGCTATTCGTCCATTTGGTGCGAAAGAATCTTATCATAGCATTGAGGAAGCATTCACTGGTTTCACAACACCAGAAATTCTTGATGGAAATAACCAGGGCTTGAAGTTTCTAACGCTACCATACTGCTTGACAATACAGTTGAAGAGATTTTCATATGACTATAACACTGGTCAAAGAATTAAACTTCATGATAGTGttacttttcctgaaattatcAGAATGAATGACTTTATTCACATTGACGACCAGGAGATATCAGCACCAAGTGAACTGACTGGAAAACTATCTCACTGCAAGGAGACTATAGTTAATGGCGAAGAAAGATGTATTGATCATACCAGTGGAAAGTTTAGCTCAGACGTTGATAGTGAACATAATGAAAGACAGTCATCAGAAGTTTACGAATTATTTTCAGTTATGATTCATTCGGGAAATGCATTGGGTGGACATTATTATGCTTATATCAAGTCATTTGCTGATAGTAAATGGTATTGCTTTAATGATCAACATGTATACGAGATATCAAAAAGAGAGCTTGAAAAGTCGTACGGAGGTTTAGATACGAGTTCCAGAGGTTATTATTCTGCCACATACTCAAGTTCTACAAATGCATATATGCTGATGTATAGAAAAAGGGACACTGCAAACAACGCAACATTTGATGATCCTTTAAACTGGTCAGAGCATTTGATTGACCTTCGTGAGAAGTTAATTCATGAAGAAGATGACGAATTTGATAGAAAGACAAAAGACCGTGATATCTGCAAGATTCGCTTGTTTTGCGAACATCCGAAAACAGGCAAATGGATGGAGACGAAACTTCACATTGAACAGTCAAAGACATTAAAGGAGGCTACTGAAGTAGCATGGAAGCTTCTAGGTCTGGAGAGTGTCATTGGATTGGGAAAATGTCGTCTTGTGAaatatgatgataattatggCTCCTACGTCAGATCATTTGATGGAGAAGATAGCAAAGAAATCGGCATCTTGCTGGGAGGAGTGAAATCATCGTATGCATTTGATCTTCTTCTGGAAACAAAAAATGACAGTGAACAGTTTCCTGTGTATGAAATCGGAGGTACAACAATCAGAGTTTACAATGTAAATCTCgaaagaaatgaaatagaagAACCACTGGTTTTGCATGCGAAAAAGGACGATACTTTGAAGGATCTGAAAAAAGCCATTGAAGAGgagtttaacttgccccCAAAGAATATGCGAATAGTTTTGGGGAAGGATTATCATGATTTTCGGTTACTGACTGATTTTGACAGAACTCTTAAATCAGAAGGATTTTACAAAAGTGCAAAGGTTTTCGTGGAAACCTCTGGGGGAACAGATTCAGAGAAAACTTTCAAAGCTTCTCAATTTGCAAACATTTTGGATATTTATTCAAATACAATTCGACTGAATGTAGTATTGCCGTTTGTTGATGAGAAAACTAAAGAAGCAAAagAAATGGTGTTGAAATTCGACAAAAGGAAAACATTGGAAGACTTTAAAGATGTGATTGCTGAACGGGTTGGCATCGGTTCTGATCAATTTAGAGTTTATCGGGTATATTCAAATAATCAAGAATTTGAAGTTACTAGGTTGACTGACCAGCTCACAAGTTATGGCGACGAGACGAAACTTATAATCAAACTTGGCCGAGCACTTAAGCTTGGTGAAACTAGAATCAAAGTGTATCTGTTTAGGCCAAATGAAGAGGAGCATACCAAATTCTTGATGGAAACTGTTGTATCTGAGAGTATAAGAGTTGAAGACATAAAAGAAGACATAGTAAAGGAATTAAAGTCGACATTTAATATTGATGCAAGTATTGAAAGGATAAGACTGCGAAAGAAATCGTGGAAAAACCCTAGTACAATCTACACTAGCAAGAGTGTATTTGGAAAGGATATTCGATTGTCAACAAACCCAGACTTCCTTGTTGAAATTGTAGAAGaaTGTTATCAAAAGACTTCTATTGAAACTCTGTTCATTTATGCCAAACGATGGAGGCCTTCAAACTTTCTTATTGACGATTTTCAAGAGGTTATGATTGAAGACCGAACTGTGCAAGCATTTAAGTCAAAGCTGTCAGAATTGAGTAGTTTACCAGAGGATAGAATTGAAATGGCAAAGGGGAAAGGCTACTTTCCATTTGAGTCATCTGTACTTGAAATGGATAGTGAGTTAGATTGGAATCCTGATGTAGCTAGTTTAACGGAATATCCACTTACTATTTCTGATGATGGCTCACTCATCTATTATAGAGATAGCGATGAAAAGAAAGGGGAATTGtcagaagagaagaagaaggaTATAAGAGAGAAAGAGAGGAGACGGTTGTTTatctttcctttcaaagtagACCCTCTAGAACACTCTTTACTTTTCTTGGCGAGCAGAGAATTTCGAGCAGATTCAAATTTAAGATTGACGCGCTGTTATCTGCTGTAA

Transcript

BRAKERKYLT00000016936

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96K76	Ubiquitin carboxyl-terminal hydrolase 47 OS=Homo sapiens OX=9606 GN=USP47 PE=1 SV=3
E1C1R4	Ubiquitin carboxyl-terminal hydrolase 47 OS=Gallus gallus OX=9031 GN=USP47 PE=3 SV=1
Q5U252	Ubiquitin carboxyl-terminal hydrolase 47 OS=Xenopus laevis OX=8355 GN=usp47 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003814 (this species only)
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19718 all species →	USP47_C	Ubiquitin carboxyl-terminal hydrolase 47 C-terminal	Domain	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR050164 all species →	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR045578 all species →	Domain	Ubiquitin carboxyl-terminal hydrolase 47, C-terminal	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24006 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000016936.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.