Gene detail

Detailed information of BRAKERKYLP00000017078.1 in Mastigias papua

Genomic Location: :...
NR annotation: XP_047125576.1, nuclear pore complex protein Nup205 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKYLT00000017078

ATGGATGGAAAACCTTGTGGCCCATGTTGCAAGATAGGGCCTTCAATTTTGAATGCTGACTTAGCTAACTTGGGAGAAGAGAGTGTGAAGTTGCTTGAGAATGGCGCGGATTATCTTCATCTAGACGTAATGGATGGGAAGTTTGTCCCAAATATTACATTTGGTGCACCGGTGGTCAAATGCTTGCGAACAAGAGTTGACAAGGCATTTTTTGATATGCATATGATGGTGGCAGAACCAGAAAAGTGGGTGAATGACATGTATAATGCTGGCTGTGACCAGTACACGTTCCATATTGAGGCAACAGATGATCCTTTGAGACTTATAAGACAGATTAAAGAAGCAGGAATGAGGGTTGGCATTGGAGTTAAACCAAAAACTGATGTTGATATTGTTTTACCTTATGTTGAGCAGTCTGACATGATTCTGATAATGACAGTTGAGCCTGGATTTGGAGGGCAGAAATTCATGGCTGATATGATGCCCAAGGTTGAAAAACTGAGGCAGTTGTACCCAGAACTTGATATTGAAGTAGATGGAGGTGTTGGACCATCCAATATTGAAGTGGCAGCAAAAGCTGGGGCAAATATGATTGTCTCTGGAACTGCAATTGTTAAAAGTGATGATCCAAGGAAAGTTATACGAGAGCTAAGAACTGGGGTTGACAAGTACTTGTCTTgTATGTGGACACCATACAAGGAGCTGCTGTCTATTGTTGAAATTGTTATTGGTCATAACAAAGTGGAATATATATCTGATCTGGAGAAGTACCTTGTCACATATAGGCCAGCTGTTATTGCTCTGCTTGAAAATCCACGGAGAAGCACAAAGCAAAGGGAGGAATTGAAGAAAGCACCAGAGGATGGGATTCAGATTGATGGCACCCATGGCACAACAAAATTATCAGAGTCATTTGTGACAGAGGCTCTAGCATTCAGTGATGCCTTGAATCTCAGTGAATTTTCATGTGTAGATCTGTTAGTATCTGCTGAGCAACAGATGTCAAATTTCCCAGGTCTTTCTAGAGGGCTTGTGGCTGCTTTGCTGTATCATGACGGCAGAAGGTGTCTGGTGACAGCATTAAAATTGCTTATCACTGCAAAAGATGGCATCTCGTGGGCCCTAGATGTTGATGAGCAAACTACCACGCTGGTGAACCAATACACTAGCAACTTGTTTAATGATGGTCTGATTGGAAAAATACTACAGAAACTGAATGAAATCAATGTACAAACAGAACTGGATACATTAGAGAAATGCAAAGCAGTTGGAGACGGGAAGCATAGGAAACAACTGACCGGGTTAATCAATGAGCTGCGAAATTCTTTGGCTGACTGCCTCTTTTGCTGGGCATGCCAAGCTCCTCTCGGCAGAAGAGACACCCTTGTAGTCATCGACTTTCTTAAAGATTGCGTGCCCAGTACTTCTGATGGGTCTTATGATCATGTGACACTAAAGGTGGTGATGGCAGTGCTAGTCAGCTGGTGCACCACGGGATACGAAACGTTTGTGGATGACATTTTAGCCGTTGAAGACGACAGATTTCCGGTATTCCAAGATACTGATTTCATAATGGACATTCACAAGGAGGTTATACGGCCGGACATTCAGCACTGGAGAACTCCGTCGATCAAAGCAATTCTTCAATTCGGCTGGGCAGTCTTCCTGCGATTTCTGAGTCAGATTACTTCTCTTGAACAACATGCCGATGTGTTTGAAGAGGACGATGATCTAAtgaatggcgcaattgattgTGATGCGTTTCGCGTGATGCGCACTGGTTTGATTGCTGCGGAGACATTCCCACATGAGGAGCACTGTATCAGAACGATTCACGCACTGATCACGTCCCTCATTGTGCATTTCCCTTTGAAAGTTAAAGATCTTCGAAGTCGGGGAGATGAGAATGCAAGAATCCAACAGGTGCGATTGATGGAAGGTCTGGATGTGACCAAAGGGATAAGGCACGATTTTGAAGACCTCATGTTGCTGATCGGTGATTTGTATAAGAAGGACCCATTAGATTTGGAATTAAATATCGAGTATTGGTGCCCAAACGAACCATTTGGATTGGCTTTCTCACCGCGGCCAGTTGCTTTGCAGAAGCAATCAGTACTGCATAGACAGATTTTACTGAACAAGTTTGTCCGTCTGGCTGGTGACCTCATCCCGCAAACCATGTTTAATTCATACATTAAAATGCTGACTGGTCTGTCAATAAATGAGCAAGGTGCCCAGTATTGTTTCAATTTGCTGAGTTCAGATGGAAGTATTGGCCGCTCTTCGACCTGCTCAGCGACTTGGGATCATTTCTTTCAATCTTTCAAGCAATATTATGCAAGTCTGAAGCAAGATGTTCACTCTACAGATCATCTTGCTCAtgttcatcaccatcataatatTTCTCCGGAAGAGTTAGCCGCTTTGGAATGTGTTCTTGAACTTATAACAACACTGTCTGAACACAACGAAAATGTGAGGATTGCTTTTTGTGATAACAAACAATGGCTGCCTATTGCGTCATTCTTTGGTCTCATCGGCTGTCCTGTTCCTTCAACGTTGAAAGCAAGTCTTCTTAATGCGCTAGCAGCATTTGCCAGGTCTCCAGAAATCTCGATGGTGATTTGGCAATCACTCGAAGCTACACAAATACTCTCGACGAGGACTAAAGATCAATCTTCAAAGCAAGAGACTGGCATAAAGGTGGAATTAGAGGAAACCGAGGCGCGAGACGAATGTTACCCACAAACGAGGGCATTCTTGAGACTTTTGAACAGGCTTATCGATATCACCATACCTTCAACGCTTGGCGCTGGATTTCGTGTGCCGGGTTTCTCTCCATATCTTGAATTTCTACGGGACAATGTTTTTCTGAGGTTCAAGGACAGAGCTTATCAAGATTCCACTGAAAAGTGGATGGTGGCGAGTTCTGTTTTGGAGATATTTATCAAGATTCTCGCAAGCTATGAGCCTCTCTCCGAACATCTGCAAGATCATGACGTCGAGATACAAGGCGTTCGGTTTGGTAAGGCCGCAAAGCCTCCTGGTTATGAGCTGATGCTTCATTTGCTCAACGATACACCAATGTTTAGACTGGTAATGTACATTATTGACTTTCTTGGAAAAGAACTAGATGACTCAATTTTAGGCAAAGCTTCGAGCGAAGAACAATCTGTCCTATATTGTCTGAAGCTGATAGAACACTGccttgaaaagcaaacaactcTTTTGTCATTGTTGCGAGATGGAAATTCCGCGGTTCTCATCACGCCTATGGATAAACTCCTTCTCAGCATCAACCCAAATAGCGCAGAGGCTGACTACCCGTATAAGATTGCAAGATGCATCACACTGAATAGCGTTGATCCTGAGTTATCACTTTCCGTGGTGCGCATCTTGTTACAACTGAGTGAAAGTTCTGATGTGCAGAATGAGATAATCGTAAATTTGGCTTCGAAAAAGATCGAGAGAGAACAGTTACTGGTTGGATTTTGTGAGTTTCTAGAGCATGAATTGCCAGAAGAAGTTAGTAAAGAGAAAACAGAACAAGGCGATCAGGATGATGCCTCCCACTTCTCTGGATCAGCAGTACGAAATTCAATTCGACAAAACATTGTTAACCTGTTGCTCGCAACACTGCAGCAACCATCTCCTAATCTTGCTCAATACCTCCTTGGTTTTGACTTGCAACGAAGCATTTCAAAGACAGTTCTTCAAGACGCTGGTGTCGGCAGATTCCCAAAGACCTGTTTCCATTcgattatttcattattaaatagAGGGACTGACTCATCTAATGGCCCAGCATGCATTTCGGAGACACCAAAACTCGCAGAATTGATGTATCAATTGGTTTACTTCTTGTGCGCCCACCCAGAGACAGGTATTCCCTGCCAGCGTTACTTGAGAACCAGCCATGATTTCTTTGTGACGCATGCATCGAATCTGCCGTTCGTTCGGCCTCATCTTCTAGAGGACGGAAACAAtgaattgtttgttttattgtcCAATCAGCAATCTTGGCTTTTAAAGACACTTGCAATCGAGACCAAGATGGCGTCTCAAACAAGGCTTAGATCAAGTATAGTCCGGATACTGGATGTTTTATATGGTCAACGGAGTATAAAGTCAAATGATTTTACGGAATCTCTTTGGGACAAACAAACCGACGTGCAGCATAATGTGATTAGTATGATTCTAGCTGATTTAGAGCTGACTCAGATTTACCCATCTCCATTTGAATCAAACATTTTCGATGTATCAGCAATCGAACATCTTTTATCAACTTGTGACGAGAGATCTGAAAGCACAGGTGTTATAATTTGTGACATCAAACGGCTTCATCGAAAGATCATGGTGGAACTGAATAGCGCGCAGGGGGTGTCATTTGTTGGACAGCGTCCTGAAATTCTCAAGGAGGTTGAAAATATCCTTCGATACGCTGTGGAACGAAATATGGTAAGAAGGTCATTAGGTGCAAAGAGGCATGCATTCGAGGCGTGGAGACAAGTAGTAGAAACTACGTTTGCGATATGCCATTACGAGGTGTTTACAGGAGATAGAAGAGAGGCTGTTATATTGAATCTACTCCAAGAGATGCTAACAAAGACGACAGACGAAAGGGCTATTCCTGAACTGATCTCCCCAGTTGCTGGTGCAATCTTAATGCTTATGTCACAGTACCACAACATCGTTGGACAACGCGCTATTCCCAGCGCTGATTCAGATCCGGTTGTTGTAGTTGACATGGCACCATTGCTTAAAATATTCCAAAGCATTGTCAGCTGCCTCTGTTCCACTGGCGCCTCTTATTGGAAAACGCGATGCAGTTTGTATGGAGCAATTCTATACTATATGCAAATTGGCAAACTGCAGACATCAGTTTACGAACGAGCTGCATCAGACATGTTTGTAACTACATCGAAAGAGTCTTGGGAGGCGAACACACTGTCAGTTATTTCTAGGCATGGTGACCAATTCATGGACATGCTCTGTCGAGACGCATGCGATGGGCCGGAGATCGGAGAGATGCTTGCGTTTGCTGTTCTCGACTCCTTGGTCAGCATTGATTGGCAAGAAAGGTGGTCTGGTTTCCTGTCATCTCGGGGCTACATACGTCACCTAGTTGAGAGTATAAGTGAGGATGATGGCAAACTTTTAACTGTATTGTTATCGGATGCTGATGCCCTAAAAACGGTCTATTCCCTGGAATCAAAACTTAGTTTCTTAGCAAAGTTTTCTAAAAGTGAGATTGGTGCCCAGATACTGCTGCAGTCAGGCTTGGTATCAAAACTAGTTGCATGTCAGTTCTTAGACTACCGGCCGGACGAATCAAACATTGCATTGCAGCTGTCCAAGTTGGCATACAGTCAGCAGTACGACCCGCTTTCGCCAACTAAGCTGGAGCAATACAGAGTTATATTCTTGGCTATTTTGAGACTTCTCCAAGCCATTCTCTCATCACTTGGACCAACTCATAACTACTGTTTATTACAGATACAACAGATTGTAATGGCTCACGAAGAAGTCTTCCTAACTATACTGCAATCAAACACCTCTTATAAAACATTGGCCTCTCTCAGGGAACTCTCTGTTGTCACATCAGTTGTTTGTTTGCTTAGGCCAAGGTATAATGATCCTGAAGGTGTtactgatgaaaataaaaaatcgCGAGGATTCTTGGCGAAATTACAGCGAATCTTGCTCGGATTGATGCAAACTTTTACGTCAAAAGCAGTTTGTGATCAGATCACCAAGCACTGCATTGAagaagaaagtaatgaacacATGGGTGAAGATGTTCCACCAACAAGCGAAATTTCAATTGCCAACATCAAGCGCACTGTTTTACAGATTCGCTCTAATTTAATTGGCTATGCTAGAGGCGTCGTTTCGAGTTCAGGCCTCACCGGAGCCTACTGCAATGTCATATTCTCCCCAAGTTTTATTGATGTTGCTGTCACCAGGAAAACGCACGATGACGCATTAAGGCCAGCTGATGCACGGAAAATACCGATGGGGGTCCTTGTGGAAGAGCTTGACCACGCAGCGGAAGACTTAATAATTGCAGCTAACAATATGAAAAAGTACAGCCGTAGAATGAATGAGATTGAAGACATGGCTGCGGAGGAGATCGTTCAGTTGTTAACTCAAGAATTGGTCGAAGACAGTGATCGACTTTCGAATCAGCAGAGACGAATTTTGACTCAAAAAGTCATCCAACAGTTGCTTGATTTGAATGATGACCAAGCCTGTCTTAACATTCGACATTTGATGAATGATGCTTTGAAGAATGCAATGCAGATAATTTGCTGTCTCCAAAGCTACGATCATTTGAGAAGTTTCAGTTTTGGTGAAACAGATTTAGCGCCATTATTGGATGGTGTTATTATTGGATGGCACAGACATGGTACCAAGTCGCACCATATCACACTTCAAGCTGGCGACTCTGATAAACAAGGAAAATCAAATATGAGCattaacattgaaaaatataatGTTAGCAGAGGACAGATTGAACAGTTGCAAGTCGAAGCGAAAACAGTGTTAACTGAGAAATTGTTAAAGAAAGTCATTGAGACAGAAGCTATCTATGGAAAGACTCGATCAAAGTTTGGTTTTATATCAGCAATGGTTAGGAGGATACAAGGCCTAATTACCCTTTACAGTTCAAGATAG

Transcript

BRAKERKYLT00000017078

Protein

BRAKERKYLP00000017078.1

MDGKPCGPCCKIGPSILNADLANLGEESVKLLENGADYLHLDVMDGKFVPNITFGAPVVKCLRTRVDKAFFDMHMMVAEPEKWVNDMYNAGCDQYTFHIEATDDPLRLIRQIKEAGMRVGIGVKPKTDVDIVLPYVEQSDMILIMTVEPGFGGQKFMADMMPKVEKLRQLYPELDIEVDGGVGPSNIEVAAKAGANMIVSGTAIVKSDDPRKVIRELRTGVDKYLSCMWTPYKELLSIVEIVIGHNKVEYISDLEKYLVTYRPAVIALLENPRRSTKQREELKKAPEDGIQIDGTHGTTKLSESFVTEALAFSDALNLSEFSCVDLLVSAEQQMSNFPGLSRGLVAALLYHDGRRCLVTALKLLITAKDGISWALDVDEQTTTLVNQYTSNLFNDGLIGKILQKLNEINVQTELDTLEKCKAVGDGKHRKQLTGLINELRNSLADCLFCWACQAPLGRRDTLVVIDFLKDCVPSTSDGSYDHVTLKVVMAVLVSWCTTGYETFVDDILAVEDDRFPVFQDTDFIMDIHKEVIRPDIQHWRTPSIKAILQFGWAVFLRFLSQITSLEQHADVFEEDDDLMNGAIDCDAFRVMRTGLIAAETFPHEEHCIRTIHALITSLIVHFPLKVKDLRSRGDENARIQQVRLMEGLDVTKGIRHDFEDLMLLIGDLYKKDPLDLELNIEYWCPNEPFGLAFSPRPVALQKQSVLHRQILLNKFVRLAGDLIPQTMFNSYIKMLTGLSINEQGAQYCFNLLSSDGSIGRSSTCSATWDHFFQSFKQYYASLKQDVHSTDHLAHVHHHHNISPEELAALECVLELITTLSEHNENVRIAFCDNKQWLPIASFFGLIGCPVPSTLKASLLNALAAFARSPEISMVIWQSLEATQILSTRTKDQSSKQETGIKVELEETEARDECYPQTRAFLRLLNRLIDITIPSTLGAGFRVPGFSPYLEFLRDNVFLRFKDRAYQDSTEKWMVASSVLEIFIKILASYEPLSEHLQDHDVEIQGVRFGKAAKPPGYELMLHLLNDTPMFRLVMYIIDFLGKELDDSILGKASSEEQSVLYCLKLIEHCLEKQTTLLSLLRDGNSAVLITPMDKLLLSINPNSAEADYPYKIARCITLNSVDPELSLSVVRILLQLSESSDVQNEIIVNLASKKIEREQLLVGFCEFLEHELPEEVSKEKTEQGDQDDASHFSGSAVRNSIRQNIVNLLLATLQQPSPNLAQYLLGFDLQRSISKTVLQDAGVGRFPKTCFHSIISLLNRGTDSSNGPACISETPKLAELMYQLVYFLCAHPETGIPCQRYLRTSHDFFVTHASNLPFVRPHLLEDGNNELFVLLSNQQSWLLKTLAIETKMASQTRLRSSIVRILDVLYGQRSIKSNDFTESLWDKQTDVQHNVISMILADLELTQIYPSPFESNIFDVSAIEHLLSTCDERSESTGVIICDIKRLHRKIMVELNSAQGVSFVGQRPEILKEVENILRYAVERNMVRRSLGAKRHAFEAWRQVVETTFAICHYEVFTGDRREAVILNLLQEMLTKTTDERAIPELISPVAGAILMLMSQYHNIVGQRAIPSADSDPVVVVDMAPLLKIFQSIVSCLCSTGASYWKTRCSLYGAILYYMQIGKLQTSVYERAASDMFVTTSKESWEANTLSVISRHGDQFMDMLCRDACDGPEIGEMLAFAVLDSLVSIDWQERWSGFLSSRGYIRHLVESISEDDGKLLTVLLSDADALKTVYSLESKLSFLAKFSKSEIGAQILLQSGLVSKLVACQFLDYRPDESNIALQLSKLAYSQQYDPLSPTKLEQYRVIFLAILRLLQAILSSLGPTHNYCLLQIQQIVMAHEEVFLTILQSNTSYKTLASLRELSVVTSVVCLLRPRYNDPEGVTDENKKSRGFLAKLQRILLGLMQTFTSKAVCDQITKHCIEEESNEHMGEDVPPTSEISIANIKRTVLQIRSNLIGYARGVVSSSGLTGAYCNVIFSPSFIDVAVTRKTHDDALRPADARKIPMGVLVEELDHAAEDLIIAANNMKKYSRRMNEIEDMAAEEIVQLLTQELVEDSDRLSNQQRRILTQKVIQQLLDLNDDQACLNIRHLMNDALKNAMQIICCLQSYDHLRSFSFGETDLAPLLDGVIIGWHRHGTKSHHITLQAGDSDKQGKSNMSINIEKYNVSRGQIEQLQVEAKTVLTEKLLKKVIETEAIYGKTRSKFGFISAMVRRIQGLITLYSSR

Uniprot

Uniprot term	Description
Q92621	Nuclear pore complex protein Nup205 OS=Homo sapiens OX=9606 GN=NUP205 PE=1 SV=3
Q8IQV9	Nuclear pore complex protein Nup205 OS=Drosophila melanogaster OX=7227 GN=Nup205 PE=2 SV=1
Q8VEE0	Ribulose-phosphate 3-epimerase OS=Mus musculus OX=10090 GN=Rpe PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00834	Ribul_P_3_epim	Ribulose-phosphate 3 epimerase family	Domain	Interproscan
PF11894	Nup192	Nuclear pore complex scaffold, nucleoporins 186/192/205	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000056	Family	Ribulose-phosphate 3-epimerase-like	Interproscan
IPR021827	Family	Nucleoporin Nup186/Nup192/Nup205	Interproscan
IPR011060	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR026019	Family	Ribulose-phosphate 3-epimerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31344	NUCLEAR PORE COMPLEX PROTEIN NUP205	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016857	Molecular Function	racemase and epimerase activity, acting on carbohydrates and derivatives	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006999	Biological Process	nuclear pore organization	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0044611	Cellular Component	nuclear pore inner ring	Interproscan
GO:0004750	Molecular Function	D-ribulose-phosphate 3-epimerase activity	Interproscan
GO:0006098	Biological Process	pentose-phosphate shunt	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14310	NUP205, NUP192; nuclear pore complex protein Nup205	-	Chromosome and associated proteins	ko03036	deepkoala