Genomic Location: chr3:13699720...13707187
NR annotation: XP_027046706.1, DNA-directed RNA polymerase II subunit RPB9-like [Pocillopora damicornis]
Species Mastigias papua · all data for this species · gene families
| CDS |
| BRAKERKYLT00000017790 |
| Transcript |
| BRAKERKYLT00000017790 |
| Protein |
| BRAKERKYLP00000017790.1 |
| UniProt accession | Description |
|---|---|
| P36954 | DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens OX=9606 GN=POLR2I PE=1 SV=1 |
| P60898 | DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus OX=10090 GN=Polr2i PE=1 SV=1 |
| P60899 | DNA-directed RNA polymerase II subunit RPB9 OS=Sus scrofa OX=9823 GN=POLR2I PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009129 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01096 all species → | TFIIS_C | Transcription factor S-II (TFIIS) | Domain | Interproscan |
| PF02150 all species → | RNA_POL_M_15KD | RNA polymerases M/15 Kd subunit | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001222 all species → | Domain | Zinc finger, TFIIS-type | Interproscan |
| IPR034012 all species → | Domain | Pol II subunit B9, C-terminal zinc ribbon | Interproscan |
| IPR019761 all species → | Conserved_site | DNA-directed RNA polymerase M, 15kDa subunit, conserved site | Interproscan |
| IPR001529 all species → | Domain | DNA-directed RNA polymerase, M/15kDa subunit | Interproscan |
| IPR012164 all species → | Family | DNA-directed RNA polymerase subunit/transcription factor S | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11239 all species → | DNA-DIRECTED RNA POLYMERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0006351 all species → | Biological Process | DNA-templated transcription | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0003899 all species → | Molecular Function | DNA-directed 5'-3' RNA polymerase activity | Interproscan |
| GO:0001193 all species → | Biological Process | maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II | Interproscan |
| GO:0005665 all species → | Cellular Component | RNA polymerase II, core complex | Interproscan |
| GO:0006283 all species → | Biological Process | transcription-coupled nucleotide-excision repair | Interproscan |
| GO:0006367 all species → | Biological Process | transcription initiation at RNA polymerase II promoter | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03017 | RPB9, POLR2I; DNA-directed RNA polymerase II subunit RPB9 | - | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Mastigias papua tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Mastigias papua, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
