Gene detail

Detailed information of BRAKERKYLP00000018344.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_027046453.1, nuclear RNA export factor 1-like isoform X2 [Pocillopora damicornis]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000018344

ATGTCGTCGAACTTTTTCAAAGCTATCAATGAAGCCAATTTGTCTGTAACAAGAAGAAGTGATGGTTCTCGTCAATTTGGAAGAAGTGCACATATGGACAGGGAAGATGACAGGTCTACAAGGGGGTCATATAATAATCGAGGACGATCAAGAGGAAGATATCGAGGTCGCAGTGGAGGTGGACGATTCAATAACAGGAGAGGTGGGCGTTACAGAGAGAGTGTAAATCCTATGTCAAGGTTTGATGATGACAATGGGGATGATGACCAGTCCATGGGAGATAGTGCTTCTTCAAGAATGAGATACAAACCATATGGTGGCTATCAAGGTTATAGAAGAGGATATCAGCACCAGGCAAACAGTGACAGAAGATCATTTGGTTCTAAATGGTTTAAAATCAGTATACCAGGTGGTAGAAACCATGAGCAGAATTGGTTAATCTCAAAGCTGAAAAACCAAGTAACTATACCATTTGAATGTGTTGAGTTTCATTGCATTGGCGATTCAGCATGCTTTTTTGTTGATGATAAAGATGTCGCTGATGCTCTGAAAAGTAAAAGCAACCGAATAACTCTGCGTGATGGATCTAAGCTTGCAATTATTGTCCGCCCCAGTGACCCACCAAGGATCAcaagtggtggtggtggcatgGGTAGAGGTGGCAGGAAAAGTGAAGGATCTTCTTTTGTACCAAAGGTCATTGATAGCGAGACTGAACAGATACTAATTAACTGCTTGGCACAGAGATATATTGTTGAATCAAAGGCAGTCAATCTTAGCAAATTATCAGATGACACAGttttggtttcTAATGACATCAAACGAACTGCTGGCAAGCCTTGGCTGTTTTTAGCATTGTTTGACACTATTCATAAAATCAACCCAGAGGTCGCAGGACTGGACCTTTCTGGTAATGAAATTCGTAGTTTAGATATGCttagaaatattcaagaaaaactgCCAAGACTTCAAACCCTCTCTATAAAAAACAACGAGATTCAGAGTTTAGACGAACTTGATTGCTTGAAGACGATGGAATCGCTCAAGCATTTACATGTAGATGGCAATCCATTCTGCTCTAAGTACCAAGGCAATTTGGAGAGTTTGAAGAGAAGTGGTGAGAAAAAGTCAGCTGCAATGGTTTGTGATGCGGTGAGACAAAGTGGTGATAGCTTGGCAAAGATTATTTTAGAGAGTATGGTTGATGGTAGCAAGAGCAGATGTAGACCTGAGAAGAGTTGGGTGACTGACATTGCTAATTGGATAGTGAAGAAGGTGGCGGAGTTGATCACAACGGCTCGAGGTGTTTGGAGTTGGATAGAATTTTGCTTTGGCATGTCTGTGAGAATCATGTCCTTTACTCACAGatattttcaaatttatgatAGTGACGACAGGCAGGGTCTCCTAGAGTTTTACCATGATCAGTCGATTTTGTCACTTTGTGTCAATAGCAACGTATATTCAAAAGGATTTGGCAGAGAACGGCAGCAACCTCTGAACGAATATTTCCAAATCAGCCGGAATCTGAAACGACTACGCGACAGagCGAAACGAGCCTCATTGATAAAGCACACAAAGCTAGCAACTGTTGCGTTTTTAAATGAACTTCCAAAAACCCGGCATGACTTTGGGTCCTTTGGATTAGATGTTAGCATGGCTACGGGCCAGTTTGTATGCTTGACATTTAGAGGTCTTTTTCGTGAAGCAGACAATTATAGCCGCACAAATGGTAATACAATTGTCGAAGGGGCTGAAGCTTCACCTGTTTCGACTGAGACTGTTTCACAACAACAGACTTTGGCACAGCTAACTATGGAGCAACAGCAGCTTGTTAAGAAGTTCTCTGAAGCCAGTAAAATGAACCTGAATTACAGTCTACAATGCCTTCAACAGAATAATTGGAATTTCGAGAAATCAGGAGAAATTTTCATGAAACTACAGAAAGAGGGCAAACTACCCGCCGAAGCATTTGTTCAGTGA

Transcript

BRAKERKYLT00000018344

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P58797	Nuclear RNA export factor 1 OS=Coturnix japonica OX=93934 GN=NXF1 PE=1 SV=1
Q5R752	Nuclear RNA export factor 1 OS=Pongo abelii OX=9601 GN=NXF1 PE=3 SV=1
O88984	Nuclear RNA export factor 1 OS=Rattus norvegicus OX=10116 GN=Nxf1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003680 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09162 all species →	Tap-RNA_bind	Tap, RNA-binding	Domain	Interproscan
PF03943 all species →	TAP_C	TAP C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018222 all species →	Domain	Nuclear transport factor 2, eukaryote	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR005637 all species →	Domain	TAP C-terminal (TAP-C) domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR015245 all species →	Domain	Nuclear RNA export factor Tap, RNA-binding domain	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR032710 all species →	Homologous_superfamily	NTF2-like domain superfamily	Interproscan
IPR030217 all species →	Family	Nuclear RNA export factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10662 all species →	NUCLEAR RNA EXPORT FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0051028 all species →	Biological Process	mRNA transport	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016973 all species →	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000018344.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.