Gene detail

Detailed information of BRAKERKYLP00000018625.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_047133157.1, E3 ubiquitin-protein ligase UBR2-like [Hydra vulgaris]
Species abbreviation MPAPU · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000018625

ATGGGTAACATAGAATCACACGTTGTTGATGACCCTAGTGCTCACAAGGCAGTTACAGCTATGGTGGATGAATACAATAGAATAATTGGAGGTCGTGGTATTGCCAACCAAACTTTGAGAGAAATACTCTACTCTTACCTTGCTAGTGTTGTTCCACTTACTTTGAAGAAAGAAAGAGTTAATGATGTTGAAAAATTAGTTATTGACCACAAGAAATGGAAACCGTTGATTGAGTGGCCCCTTGGCTACTTTATCTGTGGCGAAGATCCAGATATTGAACTTGGAAGAATTAAAGAAATGGATAGTGCACCTATGTTCTGTGGAAAAGTTTTCGAGATGGGAGATCCAACATACTCGTGCAAgGATTGTGCAGCTGATCCAACCTGTGTCTTTTGCCATGACTGTTTTCAGAGGAGTGCAcataaaaatcataaatacagGATGCATGCTTCTGGTGGGAATGGTGGCTGCTGTGATTGTGGTGATATTGAAGCTTGGAAGAGGGACCCAGCCTGTGAAAAGCATGCTCAAAGCAGTGATGAAGATTGTGAAAAGGATCCAACAGATTCACTTGCACTAGGTGTTTTGCAGCGGGCATCATTTATGTACAGAGAACTGATACAATATTGCACTGACATGCTCCTTTGGTTAGATAATGATAGCTTACCAGGAGAGCTCATGAGGTCTTCTGCTGACGTAAAGGATTCAACTTATTTCTGTATGCTCTACAACGATGAAGTGCATACCTATGACGACGTAATACGAACATTGGAACAAGTCATTTCATGCAGCAAAGCGGAAGCAATTCGTTACGCCACTATCGTAGATAAAGAGACTCGGACTTCACGAGGTGATCGTGGCCCATTGAGATGTGAAGCGATAGAGAGAGACATTGTTGCCCATCAAGTGGCTGTCATTGAGCTACTTTCACTTTTGAATGAAATTACAGATTATTCAGCGGGTTTTAGAAGACTCCTATGTCAATTTACGCTGAAAGTAATGCCACCAAGATCTGAATCTATATTAGATGAACTACTCAAGTCGGATACATCGTTATGGAAAGTTGCAAGAGCTAGATGCCATCGACTTTTCATGAATGCCATACTTGCTGATTCATTTGGTAGACAAGGATTTGCTATCTCCTTTGCAAAGGCATACACAGTTTTGATGAAAGATTTCATCgaagatgatcatgatcatggaATATCGGCCTCATCCATGTCAGTACAAGTTTTTACTGTTCCAACCCTGGCACGAAAGCTGACCGAAGAGAATGAGATTTTGGAAGTTGTGTTCAAGACCTTTTTGGAACATTTAGAAGAGGCAATCACAGACGAAGgtcattttgatttccaaagtGGAAGGAATGGACGGACAGTTTCACTAAAGAGGGAAAGTTACATACTGCATGACTTGGGATATCTTCTTTTGCACAAACCAGATCCATGGTCACCACAACTACGTACAGCTTTTCTAAACGCATTTGGCGCATTTGGTCGCATTTTAAGGGGCATGCAGGGAATGGAGCAGGTTGTTAGAGAATTGATAACACACATTGAATTTGAGCCAAAATGGGAAACTGGATTTCTTATGCAATTATGGATGATGCCAGTTATCGAATCGATGATCACATGGTCAACTAGTGATGTTGCAATACTGAAAGAAGTTGTGAGGAGGTGCTTGACAATTCTTAATGACAAGATGCCTCGGTTAAAGTTTGAAGTGAAAAATCATCCAGAGGTTGACCCCCATTTCAAGTTGATCAGTTATGATATTTCAAAGCAGCCTGTGTCAGTTCATCTTGGACTAAGTCGATACATAGCAGGAATCCTTGCGGGAGCAACAAAGAACTCAATATCATTAGAAGAATTACTGAATCTGAAAGAGAAAAATAGTGATGAGCGCGCTCTGCTATGTCTAATGCTAATGGAATACCCTTTGAGAACTTTAGTATTTGTGGCTCAAGTCTCGGTTGGCATATGGCGAAGAAATGGCTATGCAGTTTTGCACCAGGTATCTTACTACCAGAATGTTAGGTGTGTTTCAGAAATGTACGATAAAGACATCGTTATGTTGCAGATTGCTGCATCTTTAATGGACAGTGATCATTTCCTGACGGCAATGCTTGAGAAGTATGGGCTTCTTGATTGGTTAAAGCTTGGTTTTGAAGAGTCTGATCTTGACGAGGATGCTCAGCGAAGGATAATTGTCATATCGGAAGAGTTTTTGTTAACACTGCTAGCGGTAGTAGGTGAACGTCATGTTCTTGGTATTGGTGACGTATCAAGCAGAGAAATTCTTAGAAAGGAAGTCATTCATCGCCTTGCATTGGGTCCTGCAGCTAGGAGTGAGATTGTTAAGAATTTACCCTCGAAAAATCCAGACTGTGATGAAGATTGCACATTCGAATCAATTTTGGATGATGTGTTGAAATCAGTTGCTGATTTTCGGGAACCTGGCCTGACAGGAAAAGGTTTATATCACATGAAACAGAATTACCTCGAGGAGTGCAGTCAGTATTTTTACCATTATTCAAGAACAGAACAATCCAAGGTAGAGATGGTTTCATATTGGTAG

Transcript

BRAKERKYLT00000018625

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IWV8	E3 ubiquitin-protein ligase UBR2 OS=Homo sapiens OX=9606 GN=UBR2 PE=1 SV=1
Q6WKZ8	E3 ubiquitin-protein ligase UBR2 OS=Mus musculus OX=10090 GN=Ubr2 PE=1 SV=2
Q8IWV7	E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens OX=9606 GN=UBR1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003166 (this species only)
Ubiquitin family	E3\|E3 activity\|UBR-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02207 all species →	zf-UBR	Putative zinc finger in N-recognin (UBR box)	Family	Interproscan
PF02617 all species →	ClpS	ATP-dependent Clp protease adaptor protein ClpS	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014719 all species →	Homologous_superfamily	Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like	Interproscan
IPR003126 all species →	Domain	Zinc finger, UBR-type	Interproscan
IPR042065 all species →	Homologous_superfamily	E3 ubiquitin-protein ligase ELL-like	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR039164 all species →	Family	E3 ubiquitin-protein ligase UBR1-like	Interproscan
IPR003769 all species →	Domain	Adaptor protein ClpS, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21497 all species →	UBIQUITIN LIGASE E3 ALPHA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0071596 all species →	Biological Process	ubiquitin-dependent protein catabolic process via the N-end rule pathway	Interproscan
GO:0030163 all species →	Biological Process	protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000018625.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.