Gene detail

Detailed information of BRAKERKYLP00000019281.1 in Mastigias papua

Genomic Location: chr4:1794323...1821970
NR annotation: RMX50758.1, hypothetical protein pdam_00017959 [Pocillopora damicornis]
Species Mastigias papua · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERKYLT00000019281

ATGATTAACCATCATGATAGTGCAATAGAACCGTCTCACTGGAGACAAGTTAAAGCCCGGGGCGTTATGCAGTTGCTCGAGACAATCTTGGCCATGTGGCAAACAGGACGCAGAAGGGTCCATTCAGACAGTCAAGCACTTCGATCTTTACTTGAGTCGACATATTTAGTCAGGACATTCCTAGAAgcagaaaaagctaaaaatgaTGCATGGAAAGGGAGAAGACGATTTGAGAAGGCACAGCAAGTAATCAATAATTTATTGCAGAAGAAATATTCAAGTTCACCAAAAGAACTTATTCTCAAAAGGAGAGCTCTGAACCTAGAAACAGAACTTTACGGAATTAAGGCAGCAATTGCTTATGCGAAGGAGCTTATGGCTGATCTTGATAATCAGAGGACAAcaaagaaaatggaagatgagTCTCTAACTGCGAAATTCAACAAGAtacaagattttgaagcaagaGCGCAAAGAAATCAGCTAATGATCCAAGCCCTTGTGAAGCAAAATGGAACGGCAAGGAATCGTATTGAACAGCAACAAAACGAGGTTTTATCCTATCTAAAGAATTATGTATGTACCGTTGGAAACGAAATCGATGCAATTGTTGACTCTTTCAAACGAAATCTAACGGATGAGTTGGATTGTTTTTCTTCTCTGAAGATATCTTGTCTTAATTCAATTGAGCTGCAAAGTGGCTCACATGTTCCCTCAGATACGATGTCTATCCATCGATTAACTAGCTTGCAAGATGATAAAGCTGGGAATGCACTTAAAGACATCTTACAAGGGCTTGATTTCCCAAGCCACTATGCACCAGAAGAAGTTTTTAGTAAAGTAAAAGAGCACAGAGAGATAGCAACTGAAGCAATTTCAAAGTCAAATCTAGCATTGGAAAGCAGTAAGGAACTCGAGCCTGAAGAGTTGCTGGAGAATATTTCCAAAATACAGGAAAATTGCGAAGAAATGTCGGAATTAgctgaaagaaagaagaaagagacTGTACCTGTCATTAAAAAAGCGTTCACAAGTGCTACAGATTCTCTTCAGGAATGTCTGGAATTGGAAGAATTAATTAGTTCATGGTGGGAGCAGCCAGCACAGTTTCTCGTTCCTTGGGTGAAAGAAGATGGATTTAGCTTACAGGAATGGCGTGCTGGGTCAATGGATCTCGCAGCGAAAACTAAGAAAATtaaagatgaagagaaagagAGTAAATTTGGATATGTGCACGGAGTCTCGGGACCTGTTGTTATTGCTGAAAGAATGAGTGGAGCAGCTATGTACGAACTTGTTCGAGTTGGCCATGGTGAATTGGTCGGTGAGATTATCCGTTTGGAGGGAGATATGGCAACAATCCAAGTCTATGAGGAGACATCTGGTGTTACAGTAGGAGATCCAGTTTTGCGAACAGGCAAGCCATTGTCTGTGGAGTTGGGGCCTGGTATCATGGGTAGCATTTTTGATGGGATTCAAAGACCACTAAAGGACATTTGTGAAATGACAGAAAGTATTTACATTCCTCGTGGTGTCAATACTGATAGCTTAAGTAGACAGGTCCAATGGGATTTCTCTCCAGTGCCAATCAAGgTTGATGATCACATAACTGGTGGTGATATTTTTGGAACTGTTCATGAAAATTCATTGATTAAGCACAAGATTATGTTGCATCCAAAAGCCAGGGGAACTGTTACTTATATTGCTGAAGCAGGAAACTATAATATTGATGATGTTATTTTAGAGACAGAATTTGAAGGTGAAAAATCAAAGCATACCATGTTGCAGATTTGGCCAGTTCGTCAGATGCGACCTTGTACAGAAAAGCTAGCAGGGAACTATCCTCTTCTAACTGGACAAAGAGTTCTTGACGCTCTCTTTCCCTGTGTACAGGGTGGTACAACTGCTATTCCTGGCGCCTTTGGGTGTGGCAAGACTGTCATCTCACAgtctttatcaaaattttccaattcagaTGTTATCGTTTATGTCGGTTGTGGGGAAAGAGGTAACGAAATGTCAGAAGTACTGAGAGATTTCCCTGAGttAGCAGTTGAGATTGGAGGTGTCACCGAATCAATCATGAAAAGAACAGCTTTGGTAGCTAATACTTCCAATATGCCTGTTGCCGCTAGGGAGGCGTCAATCTACACCGGGATTACTTTGTCAGAGTATTTCAGAGATATGGGTTTTAACGTAAGTATGATGGCCGATTCCACTTCAAGATGGGCTGAAGCATTGAGAGAAATTTCTGGTCGTTTAGCAGAAATGCCTGCAGACAGTGGATACCCAGCCTATTTGGCAGCTAGGCTGGCTTCCTTCTACGAGCGTGCTGGACGAGTTAAATGCCTAGGAAACCCAGAGAGAGAAGGAAGTGTCAGCATTGTCGGTGCTGTATCTCCTCCCGGTGGAGATTTTGCTGATCCTGTCACATCGGCTACTCTCGGTATTGTTCAGGTGTTCTGGGGATTGGACAAAAAATTAGCACAACGAAAACACTTCCCATCAATAAACTGGCTGATCAGCTACAGCAAATATATGAGAGCTCTGGATGAGCATTACGAGAGGGAGTATCCTGAATTTGTTCCACTTAGGACCAAGGTCAAAGAAATCTTGCAGGAAGAAGAGGACTTGTCCGAGATTGTACAGCTTGTTGGTAAAAGCTCTTTGGCAGAGGCAGACAAGATTACATTGGAAGTTGCAAAGTTGATAAAAGATGATTTTTTGCAGCAGAATGGGTATTCATCTTATGATCGATACTGCCCGTTTTACAAGACCGTTGGAATGCTAACTAATATATGTGCATTTTATGACGCTGCGAGACATTCTGTCGAAACAACTGCGCATTCAGACAACAAGATCACGTGGGCAATTATCAAAGAGCAGATGGGAGACAACATTATCTATCAATTAAGCAGCATGAAGTTTAAGGACCCAGTTAAAGATGGTAAAGATAAAATCATGAACGATTACAAAGATTTATATGAACAGATGCAACAATCCTTTCGCAACTTAGAAGAATTTTGA

Transcript

BRAKERKYLT00000019281

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q27331	V-type proton ATPase catalytic subunit A isoform 2 OS=Drosophila melanogaster OX=7227 GN=Vha68-2 PE=1 SV=2
Q5TTG1	V-type proton ATPase catalytic subunit A OS=Anopheles gambiae OX=7165 GN=Vha68-2 PE=3 SV=1
P31400	V-type proton ATPase catalytic subunit A OS=Manduca sexta OX=7130 GN=VHAA PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005517 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16886 all species →	ATP-synt_ab_Xtn	ATPsynthase alpha/beta subunit N-term extension	Family	Interproscan
PF00006 all species →	ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	Domain	Interproscan
PF02874 all species →	ATP-synt_ab_N	ATP synthase alpha/beta family, beta-barrel domain	Domain	Interproscan
PF14817 all species →	HAUS5	HAUS augmin-like complex subunit 5	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022878 all species →	Family	V-type ATP synthase catalytic alpha chain	Interproscan
IPR024034 all species →	Homologous_superfamily	ATPase, F1/V1 complex, beta/alpha subunit, C-terminal	Interproscan
IPR031686 all species →	Domain	ATPsynthase alpha/beta subunit, N-terminal extension	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000194 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Interproscan
IPR020003 all species →	Active_site	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Interproscan
IPR038078 all species →	Homologous_superfamily	PhoU-like domain superfamily	Interproscan
IPR004100 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Interproscan
IPR036121 all species →	Homologous_superfamily	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Interproscan
IPR023366 all species →	Homologous_superfamily	ATP synthase subunit alpha, N-terminal domain-like superfamily	Interproscan
IPR005725 all species →	Family	ATPase, V1 complex, subunit A	Interproscan
IPR029131 all species →	Family	HAUS augmin-like complex subunit 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43607 all species →	V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0046034 all species →	Biological Process	ATP metabolic process	Interproscan
GO:0046961 all species →	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0033180 all species →	Cellular Component	proton-transporting V-type ATPase, V1 domain	Interproscan
GO:0051225 all species →	Biological Process	spindle assembly	Interproscan
GO:0070652 all species →	Cellular Component	HAUS complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02145	ATPeV1A, ATP6A; V-type H+-transporting ATPase subunit A	EC:7.1.2.2	Rheumatoid arthritis	ko05323	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Mastigias papua tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Mastigias papua, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →