Genomic Location: not available for this species
NR annotation: XP_047131119.1, uncharacterized protein LOC100214647 [Hydra vulgaris]
Species Mastigias papua · all data for this species · gene families
| CDS |
| BRAKERKYLT00000019641 |
| Transcript |
| BRAKERKYLT00000019641 |
| Protein |
| BRAKERKYLP00000019641.1 |
| UniProt accession | Description |
|---|---|
| Q7SIB3 | Collagen alpha-2(IV) chain (Fragment) OS=Bos taurus OX=9913 GN=COL4A2 PE=1 SV=1 |
| Q28084 | Collagen alpha-3(IV) chain (Fragment) OS=Bos taurus OX=9913 GN=COL4A3 PE=1 SV=1 |
| P27393 | Collagen alpha-2(IV) chain OS=Ascaris suum OX=6253 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001899 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00092 all species → | VWA | von Willebrand factor type A domain | Domain | Interproscan |
| PF01413 all species → | C4 | C-terminal tandem repeated domain in type 4 procollagen | Domain | Interproscan |
| PF00095 all species → | WAP | WAP-type (Whey Acidic Protein) 'four-disulfide core' | Domain | Interproscan |
| PF01391 all species → | Collagen | Collagen triple helix repeat (20 copies) | Repeat | Interproscan |
| PF07648 all species → | Kazal_2 | Kazal-type serine protease inhibitor domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002035 all species → | Domain | von Willebrand factor, type A | Interproscan |
| IPR036465 all species → | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR001442 all species → | Domain | Collagen IV, non-collagenous | Interproscan |
| IPR036058 all species → | Homologous_superfamily | Kazal domain superfamily | Interproscan |
| IPR036954 all species → | Homologous_superfamily | Collagen IV, non-collagenous domain superfamily | Interproscan |
| IPR008197 all species → | Domain | WAP-type 'four-disulfide core' domain | Interproscan |
| IPR036645 all species → | Homologous_superfamily | Elafin-like superfamily | Interproscan |
| IPR050525 all species → | Family | Extracellular Matrix Assembly and Organization | Interproscan |
| IPR002350 all species → | Domain | Kazal domain | Interproscan |
| IPR016187 all species → | Homologous_superfamily | C-type lectin fold | Interproscan |
| IPR008160 all species → | Repeat | Collagen triple helix repeat | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24020 all species → | COLLAGEN ALPHA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005201 all species → | Molecular Function | extracellular matrix structural constituent | Interproscan |
| GO:0005581 all species → | Cellular Component | collagen trimer | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005576 all species → | Cellular Component | extracellular region | Interproscan |
| GO:0030414 all species → | Molecular Function | peptidase inhibitor activity | Interproscan |
| GO:0062023 all species → | Cellular Component | collagen-containing extracellular matrix | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K06238 | COL6A; collagen type VI alpha | - | Glycosaminoglycan binding proteins | ko00536 | deepkoala |