Gene detail

Detailed information of BRAKERKYLP00000020063.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: EDO45201.1, predicted protein [Nematostella vectensis]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000020063

ATGGTCGTCAAGGCTAGACGTAATGGAGTAAGCACCGGTGAAAAACAAGAGGTACGGGTTGATATAGATGGAAATAATCGAAGACGACGAATTATGGATATGAAGTTTAGTTttagaagaaaaaagaaaagtcGCCTAGAGTGCGAAAAAGAGAACGCCGGTGATGTCGGTGAAACACGCAATCGCGTAACAAAACGTCAGCAAAATAGCAACGGAAAATTAAGCAAAAGTGCAGAAGATAAACCAAAAAGGACGTTATTTTCAAAGCTTCTTTACTTTAAAAGAGATCGCAGAAGGAGTGATGTTTCTCATAATACGAAGAACAGCTCAAAATCAATGGTTTGCACGCAGTCAGAGCGGTTCGATGACACCGGCAACAGAGCGTCTTCGTCGAATGATGATAAGGGAGTCAGGGAGAAACATTCCTGCTTGGAAAACGGATATCCAAGTGCGTCTACTTGTACAAGGACTGACATGAGCGTATCTATATCAAGCCCAAATTTAACTACTGTAAATTGGCCTTCGTTTGAGAATTTAAGCGAAGATGTAAGCCGTGGGAAGTATGCATCGTTTAAGCGGTCAAGGGCGTCAATGGTTTTTCCAATAGAAACTTTGAGTACGGTTTGCAATGGCATCCATTTATCGAATTCCGAGCGACAGTTACAGCAAACAGTAGATCCCAACACAAATAATGCGATTTATTCAGGATCTTGTTTACAAAGAGACATTGATAAGGACTCTTCTGACAAAGCGGAAGGCGTTTGTGCGAGGAACACCCCATTTAATGAGTATTTGTCAAGGACTAATGATGGGAGATCCCCTCATCCAAGGAGGCGGAATCCTTGTTACGGGACATTTTCATCCCCgaacatttttgaagaaaatgactCGAGGATCATTCGCACAACACTCTACCCATTCACTAGTGTTGAAAACGTTAAGGAATATGAATGCCATCGATCAGAAGAAGGTCCAAGGTCAAATATGGATGCTCGTCCCCACTCCCGCAATAGCTGGGAAGTAAGAGAAggagatgaagatgatgacttTGTGTTCGTACCTCTTGGGAGCCCAAATGCATTTGAAGCTAATAGCAAAACCCTTTCCCGATATATAAGCTGCCCGGGAAATCTTGAGACGGAATCATCCATAGGAATGTCACCCTCTAGTCTTCCATATCGAGGAGGTGCTTCCAAACCATACTCCTCTCATCGTCGGCCGTACTCTGTGCACGAGAGTGTTATGTCACtaaatatattggaaaaaaAAGATTTGCTCAACATCAATGCTGAAATTGGTGAGGTCGAAAATTCCTCAGAGTTTCCACCAGAAGATGATTTCAATCTTCCATCCAAGGACCTGCCATTGGGGCTTGCTGAAGCATTATGGGATCATTCAGGAAAGTTAAAAAGGGAGCTGAGTTTTAGAGCAGGAGAGACCATCGCTGTTTATTTTATTGACAAGATGAAGTGGTGGTGGGGAACGATAAATGATAGACACGGCTGGTTCCCTTCATCGCATGTTAGGCTACGAATTGACCAGAAACTAAATGATTCGGAGCTAGGTGCATGGAATCTATCGTCCAAGATGATGCAGTGTGCTTTTTTGCGGCCGAATGCGCTGTCTTTGCTTGGAATGCAAACGAGTTTTTGCACAGAGGTTGACGTCAGATCACGATGCCTGCAAGAGCTCTTAACTTCAGAACAGGATTACCTGAAAACGTTAAAAGATGTTATAGAGgGATATTTATACCGAGCCAGGAAGAAGACGGAGATGTTTAGTGCAGGCGATATTGCTGTCATCTTCTGCAATATAGAGTTTATATACAAGtttcataaaaaattttatCGTGAACTAAAGGAAGAAATTTCCAGAAATACTATGCGCAACAGTCAAGTTGGACAGCTCTTtattgcacacAAAGCTGATTTTGATATATACTCAGAATATTGCAATAATCACCCAAAAGCTTGCGCAAGGTTATTAGaattacaaaaagaaaaagattttaGATTATTCTTCGAGTCATGTCGATTGCTGCAGAAGATGATCTCCTTGTCGGTAGATGCCTTTTTGCTGACACCTGTACAGAAAATTTGTAAATACCCACTGCAATTAAAGGAGTTACTCAAGCACACGCCACAAGAACACCCTGATCACAAACAATTGCAAATTGCTGTACAAGTTATGAAGGATGTAGCATCGTCGAtcaatgaaagaaagagaaagtttgaAAACTTAAATTGGATTGCGGATTGGCAACTGAATGTTGAATCTTGGGAGGGTGCAGATATTTTAGAAGTTAGCAGCGAGATGATCAAGACAGGTTCCGTGGAAAGTCTCTTTGGTGGCAAGAGGGAGAAAATACATATGACTTTGTTTGACCATCAACTTATATTATGCAAACTGGATTCCTTGAAGAAGCCAGCAAGATTAGTTTATGAGAACAGAGTAAGTCTTGATAATGCCCGTATCGATGCTGTCGATGATCCAACAGGAGAAAGTGTCTCTAGTCTAATTAGGATAacagattttggagagaatatTACTTATTGGATATCTGcgaaagaaattgaagaaactgaTAAATGGCGAAGTGCATTTAAGAAAGAGAGGCAGATAGTTGCATCTGAATTGATAGATGGAATCATGGTCCCCTTATCGATGCGTCGAACTGTAATGAAGTCAGCGAAGACAAAGAGACAAGCAGAGCTAAAGAAAGGATCAAGGAGGCGAAAATCATTGACTGACCCGTTTCAAGAATTTGGCTCCAATGTAATACGGAGGAGCTTGCGGTTAAGACGGACACAGTCGTTACGAGAAAAGAAGCATTGA

Transcript

BRAKERKYLT00000020063

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UTH8	Rho guanine nucleotide exchange factor 9 OS=Mus musculus OX=10090 GN=Arhgef9 PE=1 SV=1
O43307	Rho guanine nucleotide exchange factor 9 OS=Homo sapiens OX=9606 GN=ARHGEF9 PE=1 SV=3
Q5RDK0	Rho guanine nucleotide exchange factor 9 OS=Pongo abelii OX=9601 GN=ARHGEF9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003864 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR053086 all species →	Family	RhoGEF domain-containing protein	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45834 all species →	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000020063.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.