Gene detail

Detailed information of BRAKERKYLP00000020296.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_020914152.1, lysM and putative peptidoglycan-binding domain-containing protein 2 [Exaiptasia diaphana]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DEF4	LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Danio rerio OX=7955 GN=lysmd2 PE=2 SV=1
Q9N012	LysM and putative peptidoglycan-binding domain-containing protein 1 OS=Macaca fascicularis OX=9541 GN=LYSMD1 PE=2 SV=1
A0JNI1	LysM and putative peptidoglycan-binding domain-containing protein 1 OS=Bos taurus OX=9913 GN=LYSMD1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008538 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF06954 all species →	Resistin	Resistin	Family	Interproscan
PF01476 all species →	LysM	LysM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036262 all species →	Homologous_superfamily	Resistin-like superfamily	Interproscan
IPR018392 all species →	Domain	LysM domain	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR009714 all species →	Family	Resistin-like molecule hormone family	Interproscan
IPR036779 all species →	Homologous_superfamily	LysM domain superfamily	Interproscan
IPR050149 all species →	Family	Collagen superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023 all species →	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005179 all species →	Molecular Function	hormone activity	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0030020 all species →	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000020296.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.