Gene detail

Detailed information of BRAKERKYLP00000021347.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: KAJ8043033.1, Nucleoporin GLE1 [Holothuria leucospilota]
Species abbreviation MPAPU · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000021347

ATGGCGGCTAAAGTTGGTCAGAACCAGTTAGGTTATCTTGAAAGAAAGTCGCCAGGGAAAGAAGATGTAGTAAGGTGCTTGAAAAGTACCCGGAAAGGAAAGTTGACATACAACTCGAATTCAAGAGGAAATACTGATGCTTCCACAGAAAATCGCAGATCTGTGCAATTTGATGGAGAAAGATTAGTTATTTCCTTGAGCTCTCCTCCGGATGAAAGAAATCGTGAAAGCATCGAAGTGTTAGATGATGTAACAATAGAAGTTGCTAAAGATAATGAGCCTAATGTTAGAAGGGTTGTAAGGTTTCCGACTAAAGAAGAAGTGAAGAAGAGTGCCACAAAAACCGTTGAAAAGAAACAAAGTGGTAGAAGAGATGCGAATAGAATAGAAAAATCTGGAACTCAGGCCCTTTCTGACTGCATGTGCATATCAAAACATGATGTATTGGATTTAGTGAAAGATCGCAGAATATTTTTAGAGGAAAAAGCTAGAATGGAAGCTAGGGAAATGAAGCAAAATTTCTTATTAGGATTGAATCAGATTAATGATGATATGAAACTTGAAGAGCAGTATGCTTGTGATATTTTGCATGCCCAATACATTTCAGATATGCGCGAGCTAGAGGAAACTATAGTGAATGCCAGATCTAAAAGTGAAGAAGACTTGAAAAAGCTTTTCCTACAACATCAGAAACGCCAATTGATTGTTTCAAAGACATTACAGGCAATTGTCCAAAGACAAGAAGAAATAGAGTTAGAAAAGAGACTGCAAGAAGAAGCTCATCAGAAGATGATTGCGTTATGTAAAAGTATTGAATCTGCACTCATTAGGATAAGAGATCTTGCATCTGAAACTTCAAAAGAAATCGAATCCCATAAAGGAAATGTTTATGTGCCAGATGAGGTAAAAGTATTGAAGACAAAAGTGGAAAATTTATTTGCAGAAGCTGTAAAAACTGGGAACAAAGCAATTAAGCAGCAAGATAAGTTGGAGGAAGTGCTAGAATACATacagaaaattttgcaatcttTGAAAATGATAAAGGAAAGTGCTTTGAAGGGCATCAGAGAAGCTGAAGCAAAAGAGGAGGAAGAGaggaaagaaattgaaagaaaagctGCAGAGATCAAAGCATTCGAAGCAAAAcaagaagaaaagagaaaagagcaAGAGGCCAAAGCTGTTGCTTCTAGGCCAAATGAACATAGTGTTATTGGTTCAGGTGAAGTAGAGGCATTGAAACTTTTTGTATCCCCAATAGCATTTGAACACTACCAAGAAATAATAGAATTCCATAAGGAAGTAGCTGCATCATTTGTTCAATTCAAGAGTTCAAAGGATAAGAAAACATTGAGGTTTGACTTGACAAAGGTTATTAATACAGCCATCAATGCTACTTCTGATCAGTCTCCAGAACATCTTTTGGACAAAATTCAAAGACTAACCAAGGTTTTAAAGGGTGATACTGTTGAACTTGGAGATAAAAAAGTCAGTGCCGCTAGTGATCCAGGTGGTttgGCATATTGTAAAGACACAGTTGCAAAGAAACTTGTTCTACAAGGTGCCCAgcaaatttcatcaaattttaattcAGCATTTGCCTTTGGAGCTGTGGCACTTGGCATATGGTCACAGTTCCCTGATGTTGGAAAACTGATTCTTGCACATTTCTATTTGGCCTGCCCTTATTTGGTGCCATATTACATGCCAAAGAGAGAAGGCCAGTCTGTAGCAGAGTACTGCAAGAGTCTTGGATATGCAGTTGATGGTGATGAAGTGGAATCTGAGGATAAGTATCAAAAGAAGTTGTCTGGTATTGTCAGGTTATATGCAGCCATTTTACAGTCACCTATGCCTCCAGCATTATCATCTGTACCACATCCATTTGGCATACACAATGCTTGGACATGGATGTCAAGGGTGCTCAACCTTGAAGTAAGGGAGATGGCTACTGCAACTATTTTACATGATTTTTTAGAAGTGGCTGGTTACTCAATGTCAAAAAACTTTGGTAAGCAGTTTCAAAAGCTTTTGCAATTGCTTCATGAGGAAGTACTTCCAAAGATTGATCAGATCACAAGAGCTGAAAATAAAGGATCTGTTGTGAGGTTAAagtcatttttggaaaaatgtaTAAAATCTTCTATTTTCCCTATCCCTGATGGACACATTTCAATTAGATGGTGGAAAAGTAATAGAGGATCAGTCAGCTTATTTTAA

Transcript

BRAKERKYLT00000021347

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q53GS7	mRNA export factor GLE1 OS=Homo sapiens OX=9606 GN=GLE1 PE=1 SV=2
Q5RAS2	mRNA export factor GLE1 OS=Pongo abelii OX=9601 GN=GLE1 PE=2 SV=1
Q8R322	mRNA export factor GLE1 OS=Mus musculus OX=10090 GN=Gle1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007995 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07817 all species →	GLE1	GLE1-like protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038506 all species →	Homologous_superfamily	GLE1-like superfamily	Interproscan
IPR012476 all species →	Family	mRNA export factor GLE1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12960 all species →	GLE-1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0016973 all species →	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0000822 all species →	Molecular Function	inositol hexakisphosphate binding	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031369 all species →	Molecular Function	translation initiation factor binding	Interproscan
GO:0044614 all species →	Cellular Component	nuclear pore cytoplasmic filaments	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18723	GLE1; nucleoporin GLE1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.