Gene detail

Detailed information of BRAKERKYLP00000021522.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: CAB4016830.1, WD repeat-containing 88-like [Paramuricea clavata]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000021522

ATGAAACGAGGATTGGTCATAACATTTTTGCTTCTCCATTTGGTTCACATAAGCATTTGCTCAACGAACATTTATGGAATCTTTCAACATGAGCAGTCTGTTACAGCTTATGCAAGTTTGATTGGGAAAGAAAATGCATCGGCTATGCATACAGGGATTTGGTTGAATGACAATGAAGGGTTATCAGGTGTCATAAAAAACATGGAAGATCTTCGAAAAAAGGTTACCAGTGATCATTCATCAAAGAAAATTATCTTATCAGACACGGTTCCCTTCAGAACTGAAATGATAAAGGAACTTATTGGCCAAGAAGAAAGTCATGTTTACTCCAAGTTTCATTATAGTGAtatttataatgataatgaagttgCTATTCATAACCAGGACGAACATGGCTTCCGGGTAGCAGAGGGCATGCTTCAACTATTAAGCAAGTCAAGTTATCACCAAGAGTACATAGCAATTTTTGTAGATGATTCGAGGATGGGTCACAGATCACTGTGCTACCTCATTGAAAATTTACCCTTCTTTGACTTGAATATTATAGCATATGATATATTCTCAAACATCTCTGAGAGAACTGCAATTCTCGAAGTATCAAAGCTTGGCCATTCAGCTATATATATCGACTACAATGGCCGGGAGGCTTTGAAGATTTTTAAATTGGCTGAAGAGTTGGGAGTTCCTGGACTATATGGAGACAAAACGTGGATCTTGTCTCAGAGAACCATGGATAGTTTACCGTTGAAATGCTACATTCCATCAGGATCGTATTATGGAATTAAATtggaaaatgaaacaattgGATTAGCGCATCTTGGAAAGAACACCACAAACCATGAGGAGAAGGGAAGTAATCTCGAATTAGGATCTACGGACGTAAAATTATATCAGTTATGGATTGAACATagaaaatttttggaaaggAGTTGGAAGCCTGTTGACAGTTTTGATTTGAATGAAGTAAATGAAGTTCATTTACCATCTCTCCCAAGGATGAACGTATCCATTGCCTTGGCAGATGCGTGGACTATGATAGCAAAGTGGGAACATACCCTTAGTGGATGTAAACCTGGGGGGAGAAAAGGAACTCGAGTAATTAATGGCCATCGTGAATTCGTTTGCTTTTACGGCTTCTCTGTTGACATTTTGCAATTGCTTGAGGAGAGAGTGGGCTTTGTGGGAGTTTTGAAATTGTCGACAGATGGGAAATTTGGCTCTTATGATGAAGAGAATGGAACAATGACTGGCATTATCCGTGACATCGTAACTGGGGAAGGAGATCTAGGGATTGACCTTTCAGAAGACAAAAATAGGCTTAAAGTGCTTGAGTTTACTACTCCGTACCTAATCTTTTCGCTAGAAATCGCATATTTACAACAATATAAGCTAAAGGAAGCTCTGTTATTTGGTCCCTTCAGCCCACAGCTTTGGCTCGGTACTATAGGAGCTATTGTTGTACTGGTGGTGGCATGTTGGATATTAGAAAGAGCTAGCCCTTATGGTCATtaccaagtgaaaaaacgaactgtGAAGCATTCTGCGAAATTCGATCTTGTTGATAGCGCTAATTTCGTCATGGGAACATTTTTCACTGGTGAAATCATCAAAGAGAAGCCGGGGTCATTTGGGAATCGTGTAACGGCCATAATGGTGTCAATCGTGTCGATTCTGATTATTTCTACATACTCTGCAAATTTGATTACATTCCTAGTTGTTATGGATGAGACACCGATTGTGGATGGTATTTTTGATCCTAAGTTGATTGATGAGACAAGCAGAATTCGTGTTGGGATTGTAGAAAGTACAATTGCAGTTGGATATTTAAAGACACATAGTGACCTTCGAATACGTAGGATGTATAAAGACAGGACCAGTGAATTTTCTACTCTAAATGATGCTGTTAGTGCTTTGAAAAGAAAAGAAATAGATGTTATCATATGCGatgatatttcattattgtACATCCAATCTTTGGACCAAGATTGCGACATTAAGGTTATGAGAGCTCGTGTAGCTGAGTTGGGAGTTGGAATAACGATGAGAAAAAAATTTACATGGAAAAAGAAGTTTAATGCTGCAGTTGTTGATATTGTAAATTCTGGACTAGTGGACGATTTGTCCAAAAAATGCAAGTTACGGAAGGAGGGAAATTTGTACGTTGAAGATGGTAAACATAGCAATCGACAAACATTAGCGATGATACAAGCACATTCATCGAGATCAGACCTTGAATCTGATACAGATTCAAGCACGATATCACTAACTGCAAAAGTCTCATGGGAGCATGAACATTTAGCTAAGGTCAAGCTTCTGGTATTTCGAGGTCATCTCAAAGGAGTAAACTCCTGTTGCTTCATGAATAATGATAACATGATTGTAAGTGGATCAGATGATTGCATTGTTAAACTATGGCatttgaaaaaggaagaaagtgTTGGCAAACTAGTCGGTCATACAAACAAAGTTACTTGTTGCCGTGCATCACCTGATTCCAGAAGAGTTGCCTCAACTAGCTGGGATAACAAAGTTATTGTTTGGGACATGACAACAGGCAAACAATTGTGGAGTGGTGACCATGATGGGATAGTTACTACATGTGACTTTTCCTTTGATGGGAAATATCTCATTACTGGTAACGATTTAGAGAATTCAGTTAGAATATGGGACGCTGAAGATGGTAATCTCATTAAAGTGATGAAGTATCATACCAACACGGTTACTTGTTGTCGATTCTCATATATGCGATATCGGTTTTGCAGCACATCTGTAGACAAAACAACTTACATAATTGATATGCGTAATTATAGAGATGACATCATTCCACATAGAGTTCTTAATTTCGGAGGCCACAATAATGTAGTATCCACTGCCTGTTTCTCTCATGATGACAGACGACTTTGCACAGGCTCATGGGACAAAAATCTCCAAATATGGGATGTGAACGCTGGCAATTACAGGAAGGATGGTCCTTTTACGCTTAGCAACGGACACCAAGGATCAATTAGCTCTTGTAAATTCAGCAATGATGGATCAATTTTAGTGTCAACTTCTTATGATCAAATCCTTACTGTCTGGGATGCAACGTATGGCTTCAAGAAATTCTCATTGCAGGGTCATCTAGATTGGGTTAATGACTGTGATATCAGTAAAGACAAGAAGATCGTAATTTCTTGCTCGAGGGATCACACAATACGTGCATGGAATATTGAAAGTAGTGAAGATATCCCTGCGGTTTTGCAGAATAAATTAAATATGGGACTCCAGATACTTCAGTGCCAAAAATGTGGGAAAATGTACTCAATATCAAAAGCGCAAGACCCAGAGTCATTCCAGTATTGTGTATTTTGCCGTCTAAAGGAACCAATTCGACTGTTTTCACCTGATGATTTCCCTAGTGGCTCCTCACATTCGTTCATTAGAGatgaagaaatttga

Transcript

BRAKERKYLT00000021522

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZMY6	WD repeat-containing protein 88 OS=Homo sapiens OX=9606 GN=WDR88 PE=1 SV=2
P26591	Glutamate receptor OS=Lymnaea stagnalis OX=6523 PE=2 SV=1
P42261	Glutamate receptor 1 OS=Homo sapiens OX=9606 GN=GRIA1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006116 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00060 all species →	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF10613 all species →	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001320 all species →	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR019594 all species →	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001508 all species →	Family	Ionotropic glutamate receptor, metazoa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45048 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0015276 all species →	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000021522.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.