Gene detail

Detailed information of BRAKERKYLP00000021962.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_028519166.1, transcription factor 25 [Exaiptasia diaphana]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000021962

ATGTCGTCCAGAGCAcgaaagaaatttgcaaaacaaaatgacaTTTTATCTGAACTGGGAAAAAGTAGCGATGAGGATGACGAAGGAGTTGCAAGCCTTCCAAGTTCGAAGAAAAAGGGAAAAAGTCTGAACTCATTCGACGTTCTTTTAGCTGATGAAAGGGAGCCATCATTAGATTCTGATGAAGGTGATGGTTATAAAAATGAAGACAGGGGTGATTGTATAGAAGTAAGTAGTAAAAAGTCtacaaaaaagaagaagaataagaaaaagaagaaacagaacACTGATAAAGAAAACATGTTTAAGGAAGTAAAGGTTTCTGAGGATGAAATTGATAAGAGTGTGAGGGAGGTAAATGAACTTCTAGGTGTTAAAATGAAAGCAACTGTGCTTCAAGAAAGTGTTCCAGTTGAGCTCAGATCCAAATCAATACTTGGTGTTGAGCACAGATATTTGAATGCAGAAAATGAGATGAGGAGAAAATTTGGTTCCATTGTTGTTGGTAGTGAAAGAAGGAGAAATAACCACAGAAAGATTCCTGCAAGGACATCGTGGTTGGTGGCACCGAGAGCCAATTGGAAGCCAGCCAGTAAAACTGGATTATCAATGAAGTTGCTGGAAAACCGGGATGGAGTAAGTCATTTCGTATTTGAGCATTTACCGTCATATCAGAAGATTCAATTTGAGTTCATCCGAGCAGTGGAGTCACTTGATCATAATAACATTGTTGCGCTTTTGAACGATCATCCGAATCATATTGATTCATTGCTGCAATTGAGCGAAGTTTGTAAAATGAGTGAAGACAATCAGATGGCCGCCGAGCTTATTGAAAGAGCTTTGTACATTTTCGAACGCAGTTTTCACACTCTTTTCAATATAACTCGAGGCAATTGTAGACTGGATTATCGAAGAGCAGAAAATCGATCATTTTTCTTGGCACTCTTTCGTCATTTGAACTATATCGGCGATCGAGCTTGCTATCGAACAGCCTTGGAATTCTGTAAACTGATAATGGGGCTGGACTCAGAAGATCCTTTAGCAGTTTTGTTGATGATCGATTTCTTCGCCCTTAAATCCGATCAGTTTGATTATCTGGTACAGTTGTTTAATGATTGGGAGGTAACGAAGAACCTCCTTCAACTTCCGAATTTTGCTTTCTCTGTGCCACTAGCAATGTTTCACTCTAAAAGCCATTCGAATGAGAAGGCGAGCAAATTGCTGCAAGACGCCTTGATTAAGTTCCCGACaactttgttgttgttgatggaCAAATGCAGTGTTAAATTAAGTGATGCTATCATGGAACATCCGTACTTCCAAAGGACAAATGATGTGAAACAATCAGATGGTTTGAATAGATTAATCGCATTGTACGTGGGAAGGAGCTTTTCTCTTTGGAAAATACCAGAGGTACTTGACTGGTTGACGGAGTGTACACTGTGCACCATAGAGAGACTTAATGATAGTGACCCGCTGGCGAAACAATGGGAGCCCTTGTGGCGATCATTGTATCAAAAAGTCCCATTAAACATTTATAGGCATATTGTGATATCAGATATTAAAGAAGCAACTAGATCTTTGCCACCGGAAATCAGCAACCAGAGTACAACCACATATGATCCTTTACCCCCACCTGATTCCATTTGTGGTTACCAAATACCAGAAAGACGCCGACAGAGAGACACGAGTTCATTTTTTTCACTATTTCTTCGCTCATTGCTTCCATCTTATGGACTAGAAAATGGTAATGATAGGAATAATATTCGAGTGGATCAGCAACGGCAAGAGGTAGAACAACAACCAGAAAATGCAGACGGAGCTAGGGCGATTCTTAGACCTGGAGTGGAGAACCAGATAAATGATAGTGCACAGAGACTAATGACTGCTATGAGAGAATTACTCAATTCAATGACCTACAGAGGTGACCTGGAAGAAAATGCAGAAGGCGAAGATGATCTTGATGATGCTGAATGGTGGGACCCAGAAGATGACTCAGATTAA

Transcript

BRAKERKYLT00000021962

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BQ70	Ribosome quality control complex subunit TCF25 OS=Homo sapiens OX=9606 GN=TCF25 PE=1 SV=1
Q8R3L2	Ribosome quality control complex subunit TCF25 OS=Mus musculus OX=10090 GN=Tcf25 PE=1 SV=2
A0A8I6ASZ5	Ribosome quality control complex subunit TCF25 OS=Rattus norvegicus OX=10116 GN=Tcf25 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004418 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04910 all species →	Tcf25	Transcriptional repressor TCF25	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006994 all species →	Family	TCF25/Rqc1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22684 all species →	NULP1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:1990112 all species →	Cellular Component	RQC complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24970	TCF25, RQC1; transcription factor 25	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.