Genomic Location: chr7:5012633...5019692
NR annotation: XP_012566735.1, queuine tRNA-ribosyltransferase catalytic subunit 1 [Hydra vulgaris]
Species Mastigias papua · all data for this species · gene families
| CDS |
| BRAKERKYLT00000022429 |
| Transcript |
| BRAKERKYLT00000022429 |
| Protein |
| BRAKERKYLP00000022429.1 |
| UniProt accession | Description |
|---|---|
| Q7SYK1 | Queuine tRNA-ribosyltransferase catalytic subunit 1 OS=Danio rerio OX=7955 GN=qtrt1 PE=2 SV=1 |
| Q28HC6 | Queuine tRNA-ribosyltransferase catalytic subunit 1 OS=Xenopus tropicalis OX=8364 GN=qtrt1 PE=2 SV=2 |
| Q4QQY7 | Queuine tRNA-ribosyltransferase catalytic subunit 1 OS=Xenopus laevis OX=8355 GN=qtrt1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003402 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01702 all species → | TGT | Queuine tRNA-ribosyltransferase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002616 all species → | Domain | tRNA-guanine(15) transglycosylase-like | Interproscan |
| IPR036511 all species → | Homologous_superfamily | Queuine tRNA-ribosyltransferase-like | Interproscan |
| IPR004803 all species → | Family | tRNA-guanine transglycosylase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43530 all species → | QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006400 all species → | Biological Process | tRNA modification | Interproscan |
| GO:0016763 all species → | Molecular Function | pentosyltransferase activity | Interproscan |
| GO:0008479 all species → | Molecular Function | tRNA-guanosine(34) queuine transglycosylase activity | Interproscan |
| GO:0101030 all species → | Biological Process | tRNA-guanine transglycosylation | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00777 | QTRT1; queuine tRNA-ribosyltransferase catalytic subunit | EC:2.4.2.64 | Transfer RNA biogenesis | ko03016 | deepkoala |
Genes whose expression across the transcriptome samples of Mastigias papua tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Mastigias papua, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
