Gene detail

Detailed information of BRAKERKYLP00000022611.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_029192637.2, synergin gamma-like [Acropora millepora]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000022611

ATGCATCACCAAGCACAATCAAACATAGGAAATACAGGGAATAATGCAGCCCAAAACCAGGAGCTGTTGAAGAGACAGAAATTTGAGGAACAGAAACGAAAATTGAAGGAAATGTCAAGTAAAGGGGCAAAGTCAAAACAAGAAGCTGGAAAAAGTATGCTTGATGATTTGATATCAAAAGCAGATTTGGGCTTATCATCCAGTTCAAGTTCAGGACACCCAAGGCCTGAAACTGGTAGTCAACATGCTAATCAGGAAGGAGCATCTCAACCACAAGTTTTTCCACAAGCTTCCAATCAGATTGTTTCAAATTTTCCACTACAGACCGATATAACTATGAGTCATCAAAGCACACAGCAACAGCaattgcaacaacaacagcaacaacaatggAATCCACTGCCTCAGTTGCAATCTCAGCATCAGTTTGGTGACTTTGGTTCAAATCCTGCCATGAATTGGCATGGGAACCCACAGACTGATGAtgattttggtgattttcaagGTGGAAATGAAGAACATGTTCATGAACCAGCGCCTGGCTCACTTAATTCAAGTACGTCTTCATTGTCTAGTTTAAAGTCATCGTTTAATAGCGGTGCTCAACAAATGATAATGCCAAACCCTGAGAAATTGTCACCGGGCACTGCTGTTCCTGTTGTGTACAGTAACCAACCACATCAGCATGCTCCAAGCTCGGAAGCTTCGTCAATGCCGTCTGCGATATTTCCGTATCAAGCGGCGATTGGTAGCCAAAATGCTGAACATCAATATGGGATGAGTCAGAATATGATAGAAGGTTTCAGTTCGAGCTCTAAAGTACAGTCACTACCCTTCTCCAGCGCACCCGGGTTTCAATCTACAGTTGCATATCCTGGAACTTCCATCACAGTCTCTACAAATCCAACTGCACCAATTTCAGCTTTTCCATCGAGTTCTAATCCAGAATTAGTTGGTCAGTCGGTTGGTGCTCACTATGCTGGATCTGTTCCTGTAGAACAGAGACCTGTGCAACTTCAAGCAAACCTGATAGAGAATCCATTGCTTGGTGATGACGATCCATCCATAGCTGCGCATTTGTATGGCTGTCAGCTCCCTGCTTGGTTACACGACGCAGCCGTGTTGCCTTCTGTTTACAAGAAAGTCTTGGATAAATCTCTTTCATTGGATGGGTCGATCGACACTGCTAAAGTGACAGATATATTACGCTCTTCAAATGTTCCAAAGGATAGACTCAGAGACATATGGGAAATGGCAAACAAGAAGAACCCGGGCATTCTCGTAGAAGACGAGTTGTACCTTATTCTTGGCTTACTTGCTTTGTCACAGGCTGGTTGGACTaaactttcaatttccaagTTGTCATCGTGCAAGACTGCGCCAATTCCTGAATTCCCCGAGCATATTCTCATGGAAGTGCCAGCTGGCAGTGTATTTGGTGGAGATGTGCTAACTATTAACAGTAGTTCACGATCCTCATCGCCTGTCGACCCAGATGACAAATATAGCTTTATCAGGTCTCACAGTAAGCATTCTGATCCGGTTCTTATACCATCTGGTATTGCAGTAAGCAGTAACCAGACCAATTCGCTTGGCTGGAGTGCTTCTTTAACAAGCGGGCAGTCGGAAGAAAGTGGAACAGATTCGCAGTATAGTGATTTTCAAAGAGCTGATAATGTCGAAGGGTGGGCTGATTTTCAATCCTCTGCAAATCCCATTGGGTTTACAGCAACTGTAATTGAAAATACCGGAAAGATAGATTCTAAACAGGGTGTATTCGGAAAAGAACTGGCTTCATCTGAATTTTCTACCACAAAAACGTCTGGTGTCATCAAGGAAGTCCCTACTGACAATCCAGCATTTTTGACATCAGGATCAAATGTAGTACCGATGGTAGAGAGAAATCAACAGAATCCGGGGCTATTTGAAGGAGGTGCGGCTGATACTGGACCCGGAGAGAGGATTGAGTTTCAGAGTGGAAACAGTGCTAGCACTGGAACGGACAACCCGATGACGTCTGGGCATTTGGATTGGTCTGCTTTTAGTGCAATGAATAAAGCTGATTTTAATTCTATAGTTCCCTCCATTGTCAAGGCACAACCAGTGACAACTCAGTCGGTCGGTGCTATCGATTTTAATGCATTTAGTATGGGTAGTGCTCGATTTCATGAAGCAGAAACGATGGACAGAAAGGTATCATTGACTGAGCAAAGACAGATAAACGATTCTTCAAGAGATGATGAGTTTGGTGATTTTAGCTCGATTAATATTAATACAGTATCAAGCGATTTAATTTCGAGTAACCACGGAAATAAGATGCAAACTGGAAGTGCGCAGATACTAACAACACCATCTACTTTTCAAGCTGATTTTACAACCGTTGATCAGGAGAACAATGGTGATGTTGGCGATGATTCTTGGAATGAATTCACCTCATTTCCATCTATTACAGATAATTTTGATAACAATAAGGGAGCTTCATATGAGCCTACTGATAAACAACAACATATCCTTGGCGTTTACTCTATTCCATTTGAGAACACGACAACCATTGCAAAAGAAGACTCCAGCTTGGCACTGACCGATCTCTCCCTTAAAGATGTAGAAAGCTTACCAAGCGATAAATCCTTGCAACTTTCAGAGGACTCATATTCTGTTTTCACAAAGTCTGAAGAATCAGCCCAACTTACTGACAAACAGTCTAGTGCATCTCGTGGTATTGATGGTTATTTTTCTGGGTTTTTATTCAAGACACCACCATCGGAAAATAAAGCCCCGAATGCAGGTACTACCTTTGCAAGTAATGAAGATGGAATCTCAGGAACAGTTTCTTTTGGTGTACCTACTCAATCAGAGTTTGCTAGTTTTGCATCCTTTGACTCTTCTAAAGCACAGGACATTAGTATCTTTGAGAGTATAGATAATCAGAATGCACCTCCTCTTGAAGAAAGCTTACTACCCACCACCACGATGATTGGAGCATTCGTCAACAAAGAGGGCTCTACGCCACAagatttgccgttttcttctgtAAGCGGAGATTTTAGACACGAAGATCGAGCATTATCAGAGTTAGATGATGGAGATTTTGGTAAAGGTAATATCAGAACAGAAGCGGAAAAGAGTACGAAGTCACAGTTTGTGCCATCTCAGAGAGTACTGGACGTGAGCGAAGAGTTGAGCACTTTCACAGCCACAGCAAAAAGAGATTCTGCCCCCTCGGTTGCTAGCTCTTTTCAAAAGCCTATTGGCAGTGTCACGAAAAATATGCCTCAGCAGAGCTCCCAAGATAGCGATTTCATTGAATCAGCTTTGGATGCTAAAGACAGATACAAGGCATTGACAGGGGTTCTAGAGGATTCAGAATTACATGTTCATGAATGGAAGCGATGCCTAGATGGGGTGAAGAGGGTTTTTGAATCTGCAACGTCTATGATGAAGAAGCACAATCTTTCTTTAAATAGCAAAAGGGAAATTTTCGAAAGTGAAAAGGGAAAACAGTATTTCAATGGACTTAAGGAAATTTTTGCTGTTGCATGTAGAATAGGAATTTCAGTCGAAAATTCCGAATGCAACAGCTGGAAGATATCCATCGCGAATCTTGCCTATGGCAGCAGGATATACCACAGCACGTGTGCTAACTTCTGGTGTAACAAAGTTAGTCCAGTTTTACCAGCGTTGACACCACTAGCCTCTGGGTTGCTATAG

Transcript

BRAKERKYLT00000022611

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JKC9	Synergin gamma OS=Rattus norvegicus OX=10116 GN=Synrg PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006558 (this species only)

Pfam domain

No Pfam domain signature was detected for BRAKERKYLP00000022611.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR000261 all species →	Domain	EH domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR039656 all species →	Family	Synergin gamma	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15463 all species →	AP1 GAMMA SUBUNIT BINDING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030130 all species →	Cellular Component	clathrin coat of trans-Golgi network vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000022611.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.