Gene detail

Detailed information of BRAKERKYLP00000022628.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_047134257.1, E3 ubiquitin-protein ligase UBR4 isoform X3 [Hydra vulgaris]
Species abbreviation MPAPU · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2AN08	E3 ubiquitin-protein ligase UBR4 OS=Mus musculus OX=10090 GN=Ubr4 PE=1 SV=1
Q5T4S7	E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens OX=9606 GN=UBR4 PE=1 SV=1
Q2TL32	E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus OX=10116 GN=Ubr4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001776 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13764 all species →	E3_UbLigase_R4	E3 ubiquitin-protein ligase UBR4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025704 all species →	Domain	E3 ubiquitin ligase UBR4, C-terminal	Interproscan
IPR045189 all species →	Family	E3 ubiquitin ligase UBR4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21725 all species →	E3 UBIQUITIN-PROTEIN LIGASE UBR4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20182	VPS33A; vacuolar protein sorting-associated protein 33A	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.