Gene detail

Detailed information of BRAKERKYLP00000023866.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_048587008.1, E3 ubiquitin-protein ligase COP1-like isoform X2 [Nematostella vectensis]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000023866

ATGCATTTCGAAGATTTAGAGTCATGTTATTTCAACCTTAGACACGGAAGAATCAGCTGCGACAAAGGTGATGACGCATTGGGAACTTTCGCAGACAGTCTTCTAAATTTTACTCGATACAGTGAATTTCGACCATTAGCAACGTTAAGTTATGCTAGTGATATTTACAACGGATCAAGCATCGTCTCCAGCATAGAATTCGATCGTGATTGTGACTACTTTGCAATTGCTGGAGTTACTAAAAAGATCAAGGTATTTGAATATAATCAAGTGGTGAGAGATGTTGTTGATATTCACTATCCTGTCCATGAGATGACTTGCAATTCAAAAATAAGCTCCATAGCGTGGAGCCAATATCATAAGGGAATGTTGGCCAGTAGTGATTACGAGGGTACCGTCACCCTATGGGATGCATTTGCTGGAACGCATTCGAGATTATTTCAGGAGCACGAAAAGAGATGCTGGAGTGTGGATTTTAATATGGTAGACCCAAAGTTGATTGCATCTGGCTCAGATGATGCAAAAGTTAAGCTATGGGCAACTAACATGGAGCATTCTGTGTCAACTCTCGAAGCGAAAGCGAATGTATGTTGTGTAAAGTTCAATCCTGAGAGCAGATTTCACCTAGCTTTTGGTTCTGCAGACCATTGTGTGCATTACTATGACCTTCGAAATAACAAAAAGGCATTGGCTGTCTTCAAAGGACATCGGAAGGCGGTTTCATATGCAAAGTTTGTGACCCCCAACGAAGTTGTATCGGCCTCAACAGACAGCCAACTGAAACTATGGGATGTATCGAAGCAGCAGTGTTTAAGGACATTCAAAGGtcatttaaatgaaaagaactttgtTGGATTAGCAGCCAGTGGTGATTATGTTGCCTGTGGAAGTGAAAATAATTCATTGTACGTGTACTACAAAGGCGTCTCAAAACAAGCACTTACGTTTAAATTTGACACAATTCGAAGCGTTCTGGAGCGAGATAAAAAGGAAGACGATGTTAACGAATTTGTATCAGCGGTTTGTTGGAAACCTGATTCAAATATAGTAGTTGCTGCAAACAGCCAAGGTTCTATCAAGGCCTTTGCATGGTGCTTGCAGACGGCAGCCGTTGTGGACAAATCAGAGTCACCTGAAGTTTGCATCAAAGCAGACCGCAGGCTCCTTCTGCCTCTACCTAGAGATGGAGAGAGCTGTAAGTGTGTATTTGATGAGGGCAAAAGCCAGCTTCAGTTTTTCAAGTCAGCAAAGGATGCATTTGTTAAGATGCCTTTAGGAACACTTGATTTACAGGGAGCACAGTTTTATTTTGGGAATGCagatttatttgattttgtcaTAAATGTTGCAGGTAGGGAGCATCACTTCAGAGCTGATAATCATGAATTGATGATGGATTGGCTAAGAATGCTTAGGGACAAAGTGTACCCTGACGAAGGAATTTCTACAAATTTGATCGAGAAGCGGACAAAGTCACTCGATTTCAATACACTAGCAGACGATGAGGTATTATTCCAAAGACCTGAAAAGTTCAGCATGTCTTTGAGCAATCTAAATGAATCTACACATGGCGCAGGAACGCGCAGGAAGAGGAGAATCTTCCTGCCCTGGAGTTTCAGGAGGCCTGTTGATAGCCCATCTAGCATAAAGAgaaaaagtgatgttgatcaATCGCCTAACGAAAAGTCAATACCAATTTCGGAGTCGTCTAATAGTGTGAGTAAGAGTGCTGCCTTACCATCGACAAGGAATTCCATAGCAGCTGGCAAGAAGTGGAAATGCAAATCATGTGCTTCGTTGTCAGCGAACAATGATTCACttgaagatgaaattgaaaagctgaAGGAAAAAGTTTCTTCGTTAGAGACGCGAGTACTCGAAGACCAACGCCTTATCAAATCATTAAAGGCCGAAAATCTTTTGACGAAAAAGGATGTAGTTGTGGTAACTCAAGACCTGGTGAGCAGAGGGGAAGAAGTTGATACAAATATAGAATATAACAGGCATTGTAGGAGAGTATTGGATATGTTGGAAGATGCAAGGCTTACTGACGACAAATTGCCGAATTTTCGAAGCGCCATGTCTTCAGTTTATACGGATCGACTTGGGTTTGTTCATGGTGAACGCGAAAGCCCTGCTCAAGTTTTTCATTACTGTTGCAGCCAGTTAAAAGAACATTATTTGCTCGAAGCGAAGGAGGAAGAATTGAGGCAAAAGTGGGATAAATTTTTCGAAGAATCCGCTGGTTCTGATCTTGAATACAGTGAAGAACTATTGAAATTGGTAGCCGAAGGAGTACCTAGCGATATTCGTCCCGGTCTCTGGAAGAGGCTCATATCAAACAAAGTAAGGCACATCAAGGAGGCGAAGGGAGAAGGCTACTATGAAGAGCTTTGCACACAAATCCCCAAAATTGAAGATACCGATTATGAATTTGATGATTCTATTGAGAAGCAGATCAGGATTGATTTGCTGCGAACCATGCCATCACATAAAGATTTCAAATCACTTGAATCGGATGGTGTTGTGAAGCTACATAGAATTCTACGAGCATTTCTTTTGCATAACCCAGAGATTGGCTATTGTCAGCATGTTTTTGAAGAACTGGCTGTGGTAAAACTTCTAAACATTGTTCAGTGTGTTAAAGAAGTCGGCTGTGACCTATCACCTATCACCTTTAACTGGCTTATGACCCTGTTTGTTGACTCTGTCCCTACTGAGGTCCTCTATCGGTTTTCATTGGCACTTCTTAAGATGAATGAAGACGGAATTTGTTCCAAGTCGGACATGCTCACGTTAAtgaaatatctaaaaaagaTTGGACGGCAAATTTTTGATGCTGATTCCCTCCTCAATCTTGCGTACACTGGCTTTGAACCATTCCCTTCTGCTGATGTACTAAGGAGTATGTATGAGAAGCACTTCAAAGTTCTCCAAGAAGCCCACGAGAAACGAgagaaacaagaaaaagaatACCAAGACACTAAGAAAATTAAGCGTATGCAACCAGATGCATTAAAGATCACTTTGACAGAAGACTTTGGTAGTATACCTGAGGATTTTATGATTGAATGCTGTGAATCAGAGGGTATGCCTTTACTAGAACTCCCGTTCAATCTTCGACAAATATTCCTGTGGGTCTGTGCCGTCTCCGCAATTATTAGAACTGCCAGATTCTATTCAAAGAATAGAGGCAATGATGTATAA

Transcript

BRAKERKYLT00000023866

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NHY2	E3 ubiquitin-protein ligase COP1 OS=Homo sapiens OX=9606 GN=COP1 PE=1 SV=1
Q9R1A8	E3 ubiquitin-protein ligase COP1 OS=Mus musculus OX=10090 GN=Cop1 PE=1 SV=2
P93471	E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006674 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR042755 all species →	Family	E3 ubiquitin-protein ligase COP1	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44080 all species →	E3 UBIQUITIN-PROTEIN LIGASE COP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000023866.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.