Gene detail

Detailed information of BRAKERKYLP00000024697.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_032220436.2, probable RNA-binding protein 19 isoform X1 [Nematostella vectensis]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000024697

ATGTCACGACTCATCATCAAGAACCTTCCCAAGACATTGGAGAAGGATAAACTTGCAGAGCTTTTTGCAGCTTATGGAGACCTTACTGATGTGAAAGTGTGTAAGAAGAAATCAGGTGAATCGAGGAGATTTGGATTTGTTGGTTTTAAAAGTGAGGCAGATGCAGCTAGGGCTCTTAAATATTTCAACAAAAGTTATATTAATACCAGTAAGGTAGAAGTGGATTTTGCAAAGAATATTGGAGACCCATCAGTGCCAAGGCCATGGAGTAAGTATTCAAGCAAAAGTTCAGAGTTTGAAAGATATAGCAAAGAGAAAACTGAACGCAGAGAAAGGATAAGGCAACTTCAAGAAACAAAGTTACCTGAGAAAAATGAGAACTATAGCAAGGAGGGAGAGAATCAGAAAGGGGGAAATCAAATTAATTCTCAAAGTGATGATGTTGGATTTTATGAATTTGTAGAGGCCCATCAGAAGCCCTCTGTGAAAAAGACATGGACTAATGAGTTGGTTGACTCTAAACAGCAAGAACATAATACTAGGGGAAATACTTCTGGATCTGATAAGAAGAAAGATAGACTGCATCTCTCCAAGATCAAAAAGAGTAAAAGTACTGATACAAAAAGTAGCCAGAGTTTAGAAGCTACAGGTGAAGGAGAAGAATCGGaagaaaaagaatcaaccaTTGAAAAATCAAGTCACATTCCACAAGGAAGCAATGAAGATCAATCAAAATCTGACCTTGACTGGTTAAACTCAAAAGTTTCCAAGAACATTGATGATGAGAGCAGAAGTGGTGGcagtgaagatgaagaaagcaGCATGGCGAGTGAAAATGGTGACAGCAAAATTGAAGATGAAACAGATAGCAGTTCTGAATCTGAGGAGGAGCTAGAAACAGATGTGAAGAACATAGTATCTAGTGAAACCCTTAGCCTTACTGTTAAAATGCGTGGGGTTCCATTCTCATGtacagaaaaacaaataattgACTTCTTCCACCCGATAAAAGTAGTTGATATTAGGATCCCATTGAATGAGAAGGGAAAGGCAAAAGGCAATGCTTATGTTGATTTTGAAAGTAATAATGATGTAGAGGAAGCAATGAAGAGAAACCAGaaaaaaataaagaagagaTATATTGAGTTATTTAAACTAAAAGAAACAGATCAAAGCAAAATGGAAGGTAAATCACCTTGGGAAATGAAGCATGTCGCAGTCGATGAGGAAGATGAGCCAGTTGCCGAATCAGGACGTTTGTTTTTGCGTAACCTTGCTTACACATGCACAGAGGAAGAGATCAAAACTTTGTTTGAGAAGTATGGACCTGTAGCAGAAGTTCACTTGCCAATCGATAAAGCTACCAAGCGCATAACTGGGATTGGATTTGTGACATTCGTAATGCCAGAGCATGCTGTTACTGCATTTAATGAACTGGATGGAAGAGTATTTCAAGGACGTCTTCTGCATTTAATGCCAGCGAAAGCGAAGAAAACATCAGAAGATGCTTCCATCAATGAAGGTGCCGGATCTTCGTACAAAAAGGAAAGAGAtgccaaaattaaaaattcaagTTCTAGTGGCCACAACTGGAATACCCTATTCCTTGGTCAAAATGCTGTCGTCGATGCATTAGCTGAAAGGTTAAATATGGAGAAGAGTAGCATACTTGAAGCGGAAAATTCAGACAGCCTAGCAGTCCGGATGGCATTGGGAGAAACACAGCTAGTTGCAGAAACACGAGAATTTCTCACATCAAATGGTGTCCGTTTGGATGTCTTCGGCCAGGTAAATACCAAGCGAAGTAATGAAGTTATTCTTGTCAAGAACCTCCCTCACGGCACTAAACCAATAGAACTAAGAAACATCTTTGGTAAATTTGGCGATATCGAGAAAATACTACTACCTCCTTCAGGCATAACGGCAATTGTTCAATTTTCCCATCCAACCGAGGCTAGATCTGCCTTCAGAGGTTTAGCGTTTTCAAAGTTCAAGCATGTACCGCTGTATCTTGAATGGGCACCTTCCGATGTCTTCGAATATAAGCATGAAGATGAGAAGCAGAAACCAGAGGAAGAGGCTCAAGAAGACGTAGAGAAAGaagatgatgatgaagaagagaaCGCTAATGAGAACACAGGAAAAGTCGTCTTTGTCAAGAACTTGAATTTTGACACAACCGAGGAGTCAATAAAGACAATGTTTGAGAAATGCGGAAAGGTGACTTCTGTCACGATTGCTCGCAAGAAAGACCCCAAGAGACCTGATTCATTGCTATCTATGGGTTATGGTTTTGTTGAATTCAAACGAAGAGGTAGTGCAGATGAGGCTATCAAAGTGTTGCAGCACAAAATGCTGGATGATCATCAACTTGAACTTAAGAAGTCGCACAGAAAGGAGTCATCTTCGGAGACATCGAGAAAAAAAGCGATTGCGAAAAAACAGCGAACCAGTAaaattttggtgagaaatgtcCCATTCGAAGCAACGAAAAAGGAAATGAAGCAACTATTTGGTGCATTTGGAGAGCTTAAGACTGTGAGACTGCCGCAGAAAGTTTCAGGAACTGGAAAACATCGTGGTTTTGCTTTTGTTGATTATCTGTCCAAGCAAGATGCCAAGCGTGCCTTCAAAAGCCTTTGCCAGAGCACACATTTGTACGGGAGGCGTCTTGTGCTAGAATGGGCTGAAGATGATGATACTGTGGACAGTATTAGAGAGAAGACGGCATTGCATTTCTCTGATGGTATATAA

Transcript

BRAKERKYLT00000024697

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y4C8	Probable RNA-binding protein 19 OS=Homo sapiens OX=9606 GN=RBM19 PE=1 SV=3
Q8R3C6	Probable RNA-binding protein 19 OS=Mus musculus OX=10090 GN=Rbm19 PE=1 SV=1
Q54PB2	Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum OX=44689 GN=mrd1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003543 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR051945 all species →	Family	RRM MRD1 RNA Processing and Ribosome Biogenesis	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034423 all species →	Domain	Probable RNA-binding protein 19, RNA recognition motif 5	Interproscan
IPR034421 all species →	Domain	Probable RNA-binding protein 19, RNA recognition motif 6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48039 all species →	RNA-BINDING MOTIF PROTEIN 14B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14787	MRD1, RBM19; multiple RNA-binding domain-containing protein 1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.