Gene detail

Detailed information of BRAKERKYLP00000025111.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_047141559.1, E3 ubiquitin-protein ligase TRIM37 isoform X2 [Hydra vulgaris]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000025111

ATGCACGTCTATGCCCCCACTGTTCCAAGCTATGCTGCTCTATATGTATACGAGGCATCTTTACATCCTCATGAACTAGTGCATTGCAGATGGGTGGAAGATGTCACACAGCAACTAGATCATTTGCAAGTAAGTGCAGCTACAGCAACAGTTCCTAGCCCTGTTAAAGTTAAAGCAGAAGGCATAAAAGATGGGACATGTGAATACCATAATGAGAAGCTGAGTGTGTATTGTGACACTTGCACAAAGTGCATTTGCCACATGTGTGCTCTCTGGGGTGGAACGCATTCAAAACATGATTTCAAGCCATTAGATGAAGTCTATGACCACCATGTTTCATCAATAACTGAAGAGGTTGGTGCACTTAGGAGGCGTCTTATGGAACTAATCAGTCTCGTCCAGGAAGTGGAGAAGAACGTTGATAGTGTGAGGACTGCAAAAGAGGAGAGAGTCAGAGAAATACGAAGTGCTGTAGAACTTATGATCGCACGACTAGATACACAGCTAAAGAACAAGCTTCTTACTTTAATGGGTCAAAAGAATGCCTTGACTCAAGAAACCGAGCTATTGGAATCTCTCCTGCAAGAAGTTGAACATCAGCTTCATGTTTGCAATAAAAGTGAACTAATAAACAAAAGCAGTGAACTATTGCAGATGTTTGAACAGGTGCACAGGAAGCCAATGGCATCATTTGTAACTGCTTCTATACCAGCGGATTTTACCAGTGAAATTGTGCCATCATATGATTCTTCGACATTTTGTATATCGAATTTCAGCACTTTACGTCACAAAGGTGATCCAGTCTATAGTGACCCGTTGAATATCAACGGACTGAGCTGGAGATTGAAAGTGTATCCGGACGGGAATGGAGTGGTACGCGGTAACTATCTATCAGTCTTCTTGGAGCTGACTGCAGGCCTTCCGGAAACATCGAAATATGAATACAGAGTTGAAATGATACATCAGTCCTGTCTTGATAGCAGCAAGAACATCGTAAGAGAATTTGCATCTGACTTTGAAGTCTCAGAATGCTGGGGTTACAATAGGTTCTTCCGCCTCGATTTACTGGCAAGCGAGGGATATCTTAGTGTCCAAAACGACACTCTGATACTCCGATTCCAAGTGCGAGCTCCAACATATTTTCAAAAGTGCAGAGATCAACAGTGGCATATTAATCAGATGGAGGCATCACATCAACATTATATCCAACAAATAAACGAACTGAAAGAGAGGCTCGCAATTGAGCTGTCTCGTAACCATGCTCTTGCAACGTCAGCAGCCCGTGGGGCGCATGCAATGTCATTCTCATATGGCAACTCCAGCAATGCATCTTTGATAGAGCAGACATATGACCAAACTAGTGATAACGAGAGTCAGGCTCGATTCAAATCGAAAACGTCCAGACCTCATAGACATAGGGCTACAAAACACAAGGCACTGAGGAAGCCCCGTCATGTTGCTGTTGATTATGAGGCGCCACCAGGTGAAGCCGATGTAGAAGAGAAAGACCCCGTTGACACCACTGCAGATGAAGATCATATAGCAGAGAATTCATCTGTCACGAACCACGATGAATATGAAGACGAAAATGAAGGCGAGTCGACTGATGGGGATGATGAAGAAGAGGATGAATCTGATTTAGAAGAACAAGACCCTGATGAAAACGAGAGTTCATCTGTTAGGGCAAATCGTGCTGTTATTGAGAGTGGAAGTGAAAACGAGATTGAAAACCAAGGAGAGGAATCTATAAATTGCAGTGATACAACTGGCCTTGATGAACTTAATTTGCACGATGTTCACGAGCACGAGCACGCTATTATGAATGATATTGATGAGAAGTTGGATTTAGAGCAGAGAGAGATGTCGAACATTGAAGACGTTGATGCAGAAGCTAACGGTTCAGATAATGAAAATGGTGCAACGGCAACGCCTTTTAATATTGGCTTTATGGACCCCGAAGAGCGGGCCTTGCTTGACATGCTGGAGTCTGAGGGTCGGTCAACGAATGAAAGCATTTTGAACAAAGACTTTCTTGCTTTTCCTTCTGTAAGCACTACATCGAGGCTGCCACATATGCCTCGCAGAACGCGAGCAACAGCTCGGACGAACAGTGAATTTCTAAGGGTTTTCTTTGAAGATGAATCTATTGGCAGCAATGAGGAAGATTCTAGTGCATCACTGTTAGAGATGGTTGATGATAAAGATAAGACGAATGCAGAGAGTTCTATTGAGCATCTTGTCAAAAGAGCTGTAGCCGAGGCACTTGAAAAACATGTACAGGAAGAAAGATTGGCCGTGGCGTCAAGTTGCAATGTTAGAACAACAACTAGAACCTTTGCATCATGGCCTACGCTTGATGCGTTTCCTGACGAAAGGAGAAGTGGAAGAGAAGCAGCCAGGCctgataaaatttcaaaagcaaaatcAGCCGCTTGCAGTTTAGAAAAAGAATTTTTAGGCCTTGAAAAATGGACTTCGCAGCTACTGTCTGATTTACGAACCTCGAATGTGACCATGGCTCGACGTAGTCCAGAAAGCAGAGCAACCCAGAGCGAAATTGTTAGTGCTGCTGGTAGAGAGAATGATTTGTTGTCGGCTGCTACTTCAAGCAGTGCAGAAAACAAGACTTCATCTGGAGGCGAAGATGACGCACAGTAA

Transcript

BRAKERKYLT00000025111

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PCX9	E3 ubiquitin-protein ligase TRIM37 OS=Mus musculus OX=10090 GN=Trim37 PE=1 SV=1
O94972	E3 ubiquitin-protein ligase TRIM37 OS=Homo sapiens OX=9606 GN=TRIM37 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003976 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00917 all species →	MATH	MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR003649 all species →	Domain	B-box, C-terminal	Interproscan
IPR053003 all species →	Family	TRIM/RBCC E3 ubiquitin-protein ligases	Interproscan
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR002083 all species →	Domain	MATH/TRAF domain	Interproscan
IPR037299 all species →	Domain	TRIM37, MATH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36754 all species →	E3 UBIQUITIN-PROTEIN LIGASE TRIM37	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005164 all species →	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0016235 all species →	Cellular Component	aggresome	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0032088 all species →	Biological Process	negative regulation of NF-kappaB transcription factor activity	Interproscan
GO:0046600 all species →	Biological Process	negative regulation of centriole replication	Interproscan
GO:0051092 all species →	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan
GO:0051865 all species →	Biological Process	protein autoubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10608	TRIM37, MUL; tripartite motif-containing protein 37	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.