Gene detail

Detailed information of BRAKERKYLP00000025133.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_028020019.1, LOW QUALITY PROTEIN: S-phase kinase-associated protein 1-like [Balaenoptera acutorostrata scammoni]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G5ECU1	Skp1-related protein OS=Caenorhabditis elegans OX=6239 GN=skr-1 PE=1 SV=1
Q8NK13	E3 ubiquitin ligase complex SCF subunit scon-3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=scon-3 PE=1 SV=1
Q3ZCF3	S-phase kinase-associated protein 1 OS=Bos taurus OX=9913 GN=SKP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004214 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03931 all species →	Skp1_POZ	Skp1 family, tetramerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR001232 all species →	Family	S-phase kinase-associated protein 1-like	Interproscan
IPR016073 all species →	Domain	SKP1 component, POZ domain	Interproscan
IPR036296 all species →	Homologous_superfamily	SKP1-like, dimerisation domain superfamily	Interproscan
IPR016897 all species →	Family	S-phase kinase-associated protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11165 all species →	SKP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0097602 all species →	Molecular Function	cullin family protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03094	SKP1, CBF3D; S-phase kinase-associated protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.