Gene detail

Detailed information of BRAKERKYLP00000025226.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_047144046.1, enolase-phosphatase E1 [Hydra vulgaris]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000025226

ATGCCAAAAAATGACGACAGAGTGCGCAGAGATCTGGAGATCTTAGGACTAGAGTTATCTGCATCGGAAGATGATAGGAAGAAAGCATTCATAAAGCTATCTTTAAAAGTACATCCAGATAGGTTCAACAAGAACCCTGAAGAGGCAATTAAATTAAAATTCCATGAAGTATGCAAAGCATATAAAAGATTAACAACAGATCATTGCTGTACAACTGAATGGAATATTGATAAAAGTGATGAGATATTTTTTAGTGTGTTAGCAGACTCTTTGCAGCATAATTCAAAAGCAGCTTTGTATGGACTTTTTACGGAACTACCAAATCATaaatctcattttcaaaatgacaATGAATACAGGTGTAAGGAAGATGcttttgatgaagatgaagatgaagataccGATTTTAATAGGCTAGTAACAATTTTAACGAATCGTCTGCAAAACGGCAAGTCATTACCAGCGGGACTAACGCAAGATAAGattttgaaacTAAAAGAAGACTTTATGAACCACAAAGAAGCATCAAAAAAATGCAGTGAGGATGAAAAGTCGACTACAACGACGAAAAAGCCAAAACCACCATCTCAAGTACCTATCACGAAACCAAAACCTAAAAGCAAAAAACAGATTCTTGCGGAACAGCGCAGGCGGGAAAAGGAAATGGAAAAAATTGCTGCTGAATTGGACGAAAAGAAGaggaaagaagaagagaaagaaactGCAAGGAGACTGCTGGAAGAGGAGAAACTGCGAAAGTTAGAGGAAGAGCAAAAACGAATggaagaagaaaggaaaaaacAGGCTGCGCAAGCAAAGAAACGCAAAGAAAGgGAAGACAGGGAACGTGAATTGCGGCAACAAAAGGAAAATGAACGTCTGGAAAAACTAAAGAAACAGCAAGAAGAGGAACAGAGGAGGaaggaagaagagaagaagaggaAAGCGGAAGAAAAAGCTGCAAAATCAAAAGCACTACGTGAAGCAAAAGaaaaagaggaaaaagaaaagcaggaacaaaataaaaaactacaGGCGAATAAGAGGTTACCGACGAATGGACAACAGTATCAACCACagtatcaacaacaacaacaaaaataccCGCGTGAAGTTCCACCTAGATTTCTAAGACAAATGCAGCAGCGACAGATGCCCTCGCAACCAGAGGGTGATGATCAAGTAACAAAAACACAAATCACAGGAAAAGATGGCAAACCCATGAAGGAAGAAACTGACTGGGACAATGATAATACTGGAGATACTTCTCAGTCTTCTTTAGAAACTAAAAAGAATTGGACTGATATTGCTAGCATACCTAACGAAGACTGGGGGAAAGAACTTAGTAGTGGCGGTGGTTCGTTGTCTGATTGGGGCACAACTAGTATCACGGAGGATTGGGATGCTCCAGGTGAGCCTAGTTTTGGCGCGAATTGGACTGAGCAGCAGGTAGGCGAGGGTGTGAAAAACGAACAACCGGTGATAGGGACTATTGGTAGCGAAGTAAAAAGTGGTAAGATTCCCAAGAAAGATGCAAATGTGTGTATGGGTAAGACTGATAGCACAGTTGGTGGCCAGTTTGGAGCAATTGGACAACCAATAGTAAAGGACACCGTAAACGAGCTAGGCAAATTAAAGAACACGGAGATTGAGAAGGACACGACTGTCGCAAAGGATCCGTTATATAAAGATGTTATTGGAAACAGTACTGGTAACGAAGTAAAAGAGGAATTATTAAAAACTGTTAAAAATAGTGGGCCTAAAAGTTTGGATGTTAGTAAGCTACAGGGACCGAAAATAGCATCACCGAAATTAACGGGATGGTCCGGTTTAGATGGATTCGAACCGTTACCTAGTTATGATAGTGGTTCCCAGCCGCTTCCGGAGTCAGGTCCTAGTGTAGATGATAGTAATAAAAAATTGAAACCAAAAGCGGAAGAGTGTCTTCCTACTAACGTTAAACCTGTGGATCATGACATAGTTGCGAGTGAAGCCCATAAGGATATTGCAGTAGATAAATCTACCACAGAAACAAGCCCGGCGGGAGAATTGGAGACCGGTCGAGTATCGGATGAATGGGGTTGGACGACCGCATCGTCAAAGAAAGCGAAGCAAAAACCTACTCCTCCATCGACGTCCACTAAAGACGCAAATGTATGGGTGAATCGATCTCTGAAACAGTTACTTGATATGGGATTCAAGCTTGAAGATGCAGAAAGAGCGTTGAAAGAAAATAAGGGTATCATTGAAAGTGCCGTCAGTGATTTATTGAGTCGGACGGACACAGCTCCTGTCGATGCAAAACtgcaagaattaaagaaaagaaaagatcCAATTTGCAAAGAATCAATAGAACCTGAGGAGAAACTAACTAGTAAGAAGCCGCCAATTTGTGAAACTCATATAGCGATGGACAGCAGCAAATCTATTAAAGTAAATAAGGTTGGAAATAGTAGTATAGACTTTCCTACCCCTTCAAGTACAACTGAAGCGGTAGCCCAGTCCATATCTGTAAATCCTAGACAAAATGGCTCGTTTATGCCAGCTGACCTTGTCCAAGGCTTCCCTGATAGCACTGGCAATGCAAAACCGAAAGCTGTTGGTGTAATCGGAGGACAGCTAGCTggatcatcaaaatcatcactgCAAAGCTCTCCGAGATCTTCAGATGATTCTTCGAAAATTTTATCGGGTCCCATACAACCACCTGTATCAAGTTTAAACCAGACGCCACTGCATCACATATCAACGCCTGGTTCACAGATAACTAGCTCGTCATTACATCAGCCTGTTTTTCCTAGTTTTGGCTCTGATTCACAACCACCTCTCTCAAGCCAGTCATCGAGAATTAACCAATTGCTCCAACAGCAGCCAATTGCCCAGATCCGTCCAGGTGATACAACCCATAAACTACCTTCATCTTTGTTCCCACAGCCAGCTATTTTGCCATCAGTGGCTGGTGCAGCTAGTACAGTAGCCAAGGAGCCTGCATTCATTCCAACAGCTCTTCCATCAAACCCAAACCCTGCTCCTCAGCAGTCGAAACTTTACAAATGGACACAGTCAATCCCTATGGATGCGAAAGAGACACCCTCACCCATTGTGGGTCAGGCGGAGCGAGACAACACCAGGACTGGAGTTAGCACTACCTCTGAAACTGCCAGCACATCTATTACGCCTATTGGAGGCCCAGTTACTGTTGACCCCGTTTCTGCAAAATGGGGTGTTATTGCTGCACCCCGTCTGTCACCAACACCATCTGAGTTCAAGCCTGGAGTGCAATGGAAACCAAAAGCAGAGCTAGAGCGTGATGACAAACGGTCTAGTCAAGTAGATGACGCAAAAGAATTGACGGAACAGGAGAAAGATCCAAAGATTCTGCAAGATAGTGGGACCAATGGTCGTCCTCTGCCACCAACTGATAGGTTACCGTCTGCTGGCATCATTCGTCCACCCCCTGGTCTCAGTACCGCGAATAAATTTGAGACGCATAGCAAGACAGTTGATCCCCAAGTTGCTGTGCTGGAAGGCACAGTGGACCAAGGGACTACGAAGCTTCCGTCCAGACACTGGCTTTCGCTGTCTGGTTTGAAGCAAACGGTCGACTACAACGCCATTCGGTCACTTCTCCAGCAATACGGTATGATACGGATGTTCAGACCCGTCCAAGGGGCAGTATTTGTTTGCTATGAACACCACACCCAAGCTTTGTCAGCTGTCAATGCAATGAATGGTAGAAATATTTTCGATTCCAGTATTGTTGCATCTTTAATAGCGGAGGATGACGTCCCAAGTTTACCAGATCCCAAGATGGGCGCCCCCCAGCCTAAAGCATTCATCCACAATCAATTTCCCAACATGCAACCTAGGCCGTATTGGGACCAAAATGGACAAATGGGGACAATGACTCCACCTATGAACCCAAACATGCCATTTGCGCCTCCGCAGGCAATGGCAGGCATGCCACCAGGAGGTATGCTCGGACTTGCTCCACCTCTGGGACAGTGGCCTAGGTCTGATCCGCTAGTTAATCATTCGCCATATTGGCCATTGACTATGCAACCTCAGGGTCTTTTAAATCAGGTACCAGGTTACGGATCGTGGTCTACGAACAGTGCTCAACAAGTGACAGGAATGAGTGTCACAACAGCGCATAACGTTGTCAGTCCGTCAACGGGTACTAGACTTCTGCCAGACGGGCTTTTTAACGCAACTGAGTCTATATGA

Transcript

BRAKERKYLT00000025226

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011738 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR052068 all species →	Family	GW182 domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13020 all species →	TRINUCLEOTIDE REPEAT-CONTAINING GENE 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0035195 all species →	Biological Process	miRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0060213 all species →	Biological Process	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000025226.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.