Gene detail

Detailed information of BRAKERKYLP00000025643.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_020613303.1, fibrocystin-L-like [Orbicella faveolata]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000025643

ATGACATCTCTCCTAGTTCACATTAAGAACGCCGCAGCTGACATTGTGAGATAtgatagaaagaaaagaaatatccaATTCAACTCACCGCCACCTGTTCACGGCATCACAAAGAAACTTGTCGTAATAGCACAGCCGACGAACAGCAATGAAACTATACCATTTCCCTCGCAGCCGAAACTCCGCATTTATGATGAACTGAATAACTGGGTCCAGCCTCTTCGTAGAGAAATAGATGGATGGAGAGTGATAGCAACGATTGTCTCTGGAACTGGGGATTCGAGAGCAAGGCTATTAGGTGAATCAATAGTCGACTTCATTGATGGCACGGCTGATTTTACAAATCTGGCCGTTTCACACAAAGGGATAGGATATAAGctgaaatttgaaatcatttatCCACAAGATTTACGTTTAGCTGCAGTGTCTGAAGCATTTGATGTCAAGGAACGTATACTAGTGTTTGCGCTTCTTCAGCAACCTACAGATGCAGTTGAAATTGTACCTTTCACAGTGCAGCCAAGAGTCGAAATCCGTGATGCTGCAAATGGGGAATTAGTGAGCAACACTGGttggaaaggaagaaaatggcTGTGTACAGCAACTCTTGTCCAAAATGGCAATTCAGGATCTAGTCTAATGGGAGAAACAAGAGTCGAGTTTGAAGAAGCTTTTGCACAATTCACAAACCTGAGAGTCGATTCAGCTGGTAAAGGATACCAACTTAGATTGAATGTGCTTACCTCACCAGTTTCTACATACTCTGGCACTTTTACCACTGCGGCATTCaatgtaaaagaaaataaattatatCTGAGAATTATGCAACAGCCTGGAAATTGTAACGATACAGTCATTTGTGGCAATCAACCAATTCtggaaataaaatcaaaatatcccAATGCATTGGCAAGTGCTATTGGTTGGAAGGGTAGTAGTTGGTATATAAATGCATCAATGCATTCCGGCGCATCAAATACCGTTTTAAATGGTACAAGATATCTCAAAATTCCTACATCAGGACTCGTACAATTCACAGACTTGAATTTCTATGATGTCGCTGTTGGTTACAGATTGAAATTCAATGTCATAATTGTTCCGCATAATCCAAGATTTGCTAACATGTCCGTAGTATCTGATTCATTTGATGTAAGACAGCGAAAGTTCTTTCTCATTGTCAAAGAGCCACCCAAGGATGCAAATGATTCTGCCATATTTGGCAAGCAACCAGTTATAGAAGTGAGAGATGTGGGTACTAATCTAGCAGCAAAACCTTTGAAGAGATATTGGAAAATTACTGCCAGCATCGAGAACAACGCAGCGGGTAATGGGTCATTAAAAGGAACACTTGGTGTTACAGTAAAACGAGAGATTGCAGTATTCACAGATCTATGTATTGTTGGCTATGGTGTTGGGTattctttgaaatttgaatcaAACCATGGACACACAGTGGTAACATCATCATTTACTGTACGATACAGAAATTTTTACCGTCCAATTTTTAATCATTCATCACCAAGAATCATTGACgtgtatgaaaacatatcagCCCCCGTCATTTTGCATACCTTCTTTGCTACTGACAAAGATACTGCAACTGCTGGCTCACTGACTTATACGTTACTTGAATCTGACCTCAGTTGGTTGTTTAGCCTCTCACCTACTACAGGAAGGTTTACATTGATAGCTGGACTTGACCGTGAAAATGCTTCGTCATTTAGAGTGTCGATCCAGGCAAGTGATAATGCTCCTTCGCCGTTCTTCTTTACAACAACCCGCATTATAACAGTGAACATTCTGGACGTAAATGACAACAAGCCATATTATGCATGTCATGTGTTAAACTTTACTATACCGGAAACTTTAAAATCAGGTGAAATAGCATTTAATGTGAGCACAACTGATGCTGATGCAGGAGAGAATGGAAGAATCATTTACACGATAATATCATCGAATGCTAGTGAACAGTTTCAATTAAATGCGGATACTGGCGTTTTCACTGCATTAGTTTCTTTGGATCTTGATGGAAACGAGCAGCCAGGgtctctctttcatttcttaATGAACGTCCATGACAACGGAATTGAATTACAGCAATCGGTGGAAATCAACGTGTTTGTTCGTATTATTCAAGTCAACGAATTTTCTCCTACTTTCAACCCAAGCACTATCGTTATTTCTAAACCAGAGGACATTCCAGTCGGTTCTGTGCTAGCTACTTTGAACGCAACAGATGCAGATTCAGGTCGAGATGGGAAAATATCATATACAATAACATCAGGCAATGTGAATGGTGTGTTTGGTATAAATGCTGGACAGCTCATTGTACAGAACAAATTGGATCGCGAGACACAGTCTAGTTACAATCTACTAATTACTGCATCCGATAATCCAACTACCGGTGCCACAAAGTCCTCAATGCTCACAGTTGTATTTAATGTTCTGGATGTAAATGATAACAGGCCAATGTTTCCTCAAGCCTTCTACATtctagatgttccagaaaatgCTGCAGTAGGTACTGCAGTTGTCTCTGTAGTCGCAACAGATGGAGATGCTGGACTCAACGGACAACTGGAATACAGTGTAGCATCCGGTTCCTCGCCtctctttagattggaaagttCTACAGGCTCGTTCATCCCATTAACCATTCTCGATCTAGATTCACAAAACCTCACTTCAAGGTCATATCATATGACAGTGTTTGTGACTGACAAAGGCCTACCATTTGCTTTGAATAATTCCATAACTACCACATTACGGATAGTTGCTGTAAACGAGCATGCGCCTGTTCTAAGTCACTCAGCAGACATAGTAATGCTGTTGAATTCTAGTAAGCAAGTAGAAGATTGTATATTTAAGATTGAAGCATCGGATCGAGACTATGGAGATGATGGTAGGCTAACATACAGCATCGTAGCCGGAAATGACTATGGAATATTTTCACTAGATTCAACCAATGGACATATCCATCTTGTAAAGATCCCGTCTGGAAAGTTTTACTCGCTTGAGATGAAAGTAACCGACCATGGAAAAAACCCTGGTCCGAAATCTACAAATCTTAGACTCGTTCTATACAATGAAAGATCTTTAAGTGGTTTTGATGCTGGAAGTGTCTATGTTGGCTCCAGTCGTGCGTCAGTTCAAATTTCTGCCATAAAAGGAGCAAAATCTATAGTGCCGATTTATGCCAATGTCGCATTTCAAGATTTAGAGGGAATCGATGTCACTATCAGCTACGACAGAGGAATTGTATCGTATGAATCTGCAGTGACTGACCTCTTGGCTATCCGTACTTCTGGTGCAGTTAGACTATTTGGTCTCGTAAAAGCAGATAGCAAAATTACTGGAATTTCCAAGATTGCTGAGTTAACTTTTATTGGATTGCTATCTGCTTCTGTAAATATGACTCCAAGTGGTGTAGTAATGGCGGATAAAGCTGGAAAGGGTATTCCAACCCTTGCGACAGAACCTACTTGTGATTTCGGACCTATTCTCAGTATAAACGGTGACTGTGTTGAGGATATTAGAGATGCAGCTCTTATACAAACATACGTTCGGGAAATGCGATCTAATTTTTCATCAGCTATTGGCAAGGCTTTATCTGCTAATTTAACGATCTTTCAGAAGGATTCCATGGATGTTGACTATAATGGAGTAATCGATTATTATGATGCAAAATGTTTACAAAATGTTCTCATTGACTACACAAAATCGATCGACTCATTCACAGCTGAGCGACCACTTCTACCAGAATGTAATTTGAAAGTACAAGCTATTCTTAGAGGAGAAGAATTTAATATAGTCACAAACACACGTGCATTTGTCGTATTCACATACAGTGATAGTTCTTTAAACACAGAATTTACTTCCGTTGGCATGACTGGGTGTGCATCCTTCAAGCTTAAATCTGGCTCGAACAGATACGGAAGAGTCTTTGAACTGGAGGAATCATTCGATGGATCATTTGTTTTTACCGGTGTGAAACTAAAATTACCAAAAAATGACATCGGTATAACCCTTGTCATTGTCGTCGCAACACCAGATGGATCAATGGTCTCTTCATCTTTTGTGAAACCAGCAAATACAACGGGAAGCAAAAGTTCTATCACAGTTGCCAAAGGTATCTCATTTGATATTTATGATTCATTTGAACCTCAGATGCGAACGAATTTTTCATCATCTCTCAGCTTGTGCTATGGAAAAACGATTTCCATGCAGATTCGTTTGACATTCAATTCAAACTTTAGCTTGATTCGTGGAAAAGAAGTAGAATTCATTACTGATTTCAAGTTTGCCTTTCAAAATATACACGCAGCAGCAACAGATGTCTTTGCATCCAACTTCACAGTTAGGGCTGGGAGCATTATAATTGAGTTTGATGTCATTATCCTTGAGAGCCAAGAGTCGCAGTTTATCAATGAGTTGATGTTTGCTATAAAGAACGATTTTATACTCCATTTTGCATCAACTGACATGATTGCTGCACAGACTTTAGTAATCAATGGAAAGGAGAATATTCCGAGTCCAAAACAATCGGAGAGTGATAGCTATAGATTGGTTATTAAAACTATTGTTATAGTTATTTTCTGTGCGACAGCTTTGGCCATAGTCATCATAGTTTGCTATCGCAAAAAACACACGAGCTCAAAGAGGACAATTTGTTTTACTGAGAGATGCAGTGGTTTTACTGAAGCTGAAAGAGACAATGGAATAGAGATATCTCCAAGGGATGCCAATGAAGGATATCCGACCAACACTGATTACAGAGAAACTGCAGACGGCGTCGTTAACGATTCTGCAAAGTCAATTGCAGACCAACACTTTCAAATGGTGGGCAGTGTAGATAGCAGTGAGGTAATGGAAACTGCACTAGACAATCCAGATCACTAA

Transcript

BRAKERKYLT00000025643

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P58365	Cadherin-23 OS=Rattus norvegicus OX=10116 GN=Cdh23 PE=2 SV=1
Q5F226	Protocadherin Fat 2 OS=Mus musculus OX=10090 GN=Fat2 PE=1 SV=1
Q9R0M0	Cadherin EGF LAG seven-pass G-type receptor 2 OS=Mus musculus OX=10090 GN=Celsr2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001248 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028 all species →	Cadherin	Cadherin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR020894 all species →	Conserved_site	Cadherin conserved site	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR039808 all species →	Family	Cadherin	Interproscan
IPR036439 all species →	Homologous_superfamily	Dockerin domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027 all species →	CADHERIN-23	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0098742 all species →	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan
GO:0000272 all species →	Biological Process	polysaccharide catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000025643.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.