Gene detail

Detailed information of BRAKERKYLP00000026096.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_020627886.1, probable ATP-dependent RNA helicase DDX47 [Orbicella faveolata]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000026096

ATGGCATCAGAAAGTTCATCAATGTTAAATGAGCCATTGGAGAAGAATGACCCTGAAATCTATGACTTGATTTGCAAAGAGAAGGAGAGACAAGTGAAAGGCATCGAACTTATTGCGTCAGAGAATTTTACAAGCACGGCTGTTTTGCAATGCCTTGGCTCTTGtttaacaaataaatattcAGAAGGAGAGGTGAACAGGAGATACTACAGTGGCAATGAATTCATTGATCAAATAGAACGGCTTTGCAAATCTAGAGCACTTGCTGTTTTCCGTCTCGATGAAGAAAAATGGGGTGTAAATGTGCAGCCACTGTCGGGGTCTCCAGCTAACTTTGAAGTTTACACTGGTTTATTAAATCCACATGACAGGATAATGGGCCTCGATCTTCCTGATGGTGGCCACCTCACACATGGATTCATGACTGAGAAAAAGAGAGTGTCAGCTACGTCTATTTACTTTGAATCAATGCCATACAAAGTGGATCCTAAAACTGGCCTGGTTGACTATGATCAACTCGAGCAAACTGCCAAACTTTTTAGACCAAAACTTATAGTAGCTGGGAGTAGTGCATACTCACGAGAATTTGATTATGCGAGATTCAGGTCTATCTGTGACTCAGTTGGAGCAATACTATTGGCTGATATGGCACACATCAGTGGGCTTGTGGCTGCTAATGTTGTCCAGTCTCCTTTCGATTTTGCTGATGTTGTTACAACAACAACTCACAAAAGTTTGCGAGGAGCACGTGCAGGAATGATTTTCTTTCGTAAAGGACTTAAGACGGTTTCAAGTAAAGGAGAAAACATAATGTATAACTACGAATCTGCGATTAATTCGGCTGTGTTCCCTGCTTTGCAAGGAGGAcctcataataataatatagcTGGGGTTGCTGTTGCATTGAAACAGGCAGCTACAGAAGAATTTCGTTCATATGCAAAGCAAGTGATCCTAAATGCTCAAACACTCGCATCAGTTCTTACAGAGAAGGGATACACTATTGTTACTGGTGGGACTGACATGCACATGTTTTTGCTTGATGTAAGACCTCAGAAACTTAATGGTAGCAAAGCTGATGCCGTTTTAGAAAAATGTTGTATAACTGCCAACAAGAACACAGTACCTGGTGATAAAAGCGCTTTAAATCCAGGCGGCTTGCGCATTGGTACGCCAGCAATCACATCCAGAAACATGAAAGAGGCTGAGATGGAGAAGCTTGCTAATTTAATAGATGATGCACTCAAACTTGCAGTTGAAGTTGAGTTGTCACTGAGATGTGATGGGAAGGCCTCTACTCTAAAagatttcaaattgaaagtttcACAGCCTGAAATTGCAGTTAGAGTTGAAAAACTACGCAATACTGTTGAAGAGTTTGCCTCTAAATATCCAATGCCAGACGAGAGATTTGGAGAAAATCAATTTGATTATGACTACCTTTCTTGTGATGTGCTGGGTATAGTGGATATTCTCTGCCAAGCATGTGAAAGGCTAGGGTGGAAATTGCCAACAAACATCCAAAGAGAAGCAATACCAGTAGCATTGGAAGGAAAGGATTTAATTGGATTGGCTGAAACTGGTTCGGGCAAAACAGGAGCATTTGCTTTACCTGTTTTGCAGTCACTACTAGACAACCCACAGAGGCTTTTTGCACTTGTTCTTACTCCTACAAGGGAGCTTGCCATACAGATTTCAGAGCAATTTGAAGCACTGGGCTCATCCATTGGGGTGAAATGTGcTGTCGTGATTGGTGGTATTGACATGGTAACGCAAGCAGTTGCATTGGCAAAGAAGCCTCACATAGTCATAGGGACTCCTGGCAGACTTGTAGACCATCTTGAAAACACAAAAGGATTCAATCTTAGATCTTTAAAGTTTCTTATAATGGATGAAGCTGATAGAATCCTGAACATGGACTTTGAAGAAGAGGTAGATAAGATTTTAAGAGTCATACCAAAAGATAGAAGAACATATTTATATTCTGCAACAATGACTAAAAAGGTTCAGAAATTGCAAAGAGCTTCTCTTCAAAACCCAGTTAAAGTTGAAGTATCAACAAAGTATACAACAGTAGAAAAATTACAACAAAGTTATCTATTCATTCCACATAAGTACAAGGACTGCTATCTTGTCAGTATTCTTAATGATCTCTCAGGAAATTCATTTATGGTTTTTTGTGGTACCTGCAATAACGTCCAGAGAGTAACCCTTGTATTGCGGCATTTGGGATTCAATGCTATACCACTCCATGGGCAAATGAGTCAGACAAAGAGACTTGGTGCATTAAATAAGTTCAAATCAAAGGAACGATCAATTCTTGTTGCAACTGACGTGGCTAGTAGAGGATTGGATATTCCTCACGTTGATATTGTTGTCAATTTCGATATACCTACTCATTCAAAGGACTATATTCATCGTGTGGGAAGGACAGCTCGTGCTGGAAGATCAGGGCGATCAATCACATTTGTCACTCAGTATGATGTCGAATTGTATCAGCGCATTGAGCAATTAATCGGAAAGAAACTCCCACTTTTCCCTGTTGTCGAGGAAGAAGTAATGCTCCTTGTTGAAAGAGTAACGGAAGCtcaaagatttgcaaaaatgGAATTGCGAGAAATAAGTGATAGAAAAAAGAGATCAGTAGATATTGAAGATGAGATGGAAGAGACTTCTGTACAAAACCTGACAAAGAGACTCAAATCTGGACCTGGTAAATCTAAGAAAACTTTTAAAAGGAGAAAGGGTAAAGGCAAGGCAAAGTGA

Transcript

BRAKERKYLT00000026096

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q29S22	Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus OX=9913 GN=DDX47 PE=2 SV=1
Q9CWX9	Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus OX=10090 GN=Ddx47 PE=2 SV=2
Q9H0S4	Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens OX=9606 GN=DDX47 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001347 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00464 all species →	SHMT	Serine hydroxymethyltransferase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR019798 all species →	Binding_site	Serine hydroxymethyltransferase, pyridoxal phosphate binding site	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR044765 all species →	Domain	DDX47/Rrp3, DEAD-box helicase domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR049943 all species →	Family	Serine hydroxymethyltransferase-like	Interproscan
IPR001085 all species →	Family	Serine hydroxymethyltransferase	Interproscan
IPR039429 all species →	Domain	Serine hydroxymethyltransferase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11680 all species →	SERINE HYDROXYMETHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004372 all species →	Molecular Function	glycine hydroxymethyltransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006565 all species →	Biological Process	L-serine catabolic process	Interproscan
GO:0006730 all species →	Biological Process	one-carbon metabolic process	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0019264 all species →	Biological Process	glycine biosynthetic process from serine	Interproscan
GO:0046653 all species →	Biological Process	tetrahydrofolate metabolic process	Interproscan
GO:0046655 all species →	Biological Process	folic acid metabolic process	Interproscan
GO:0050897 all species →	Molecular Function	cobalt ion binding	Interproscan
GO:0070905 all species →	Molecular Function	serine binding	Interproscan
GO:0035999 all species →	Biological Process	tetrahydrofolate interconversion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000026096.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.