Gene detail

Detailed information of BRAKERKYLP00000026120.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_046855813.1, ribokinase-like isoform X1 [Xenia sp. Carnegie-2017]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000026120

ATGGTTAAGTATTTGAAAGATTGTTGTGGCTTCTTCCATTTGCGATATGCTACGATAATTATAGCTGTTCTTGAGATAGCTTTCTCGATCTATTTCATTCAAGATGGAATAGAACACACAGGgaaaactgaaatcaaaattgCTCACAAGGGTAATCATTCGCTGTCCATACGGAACGCCACAGCACAACATCGAGATTTAGATGTCACACGTACAAAGGAGACTGGTGCTTCAATTACAGTTGCGCTTGTTGGATCTTTGAACATCATCGTTGCTGTAGCTTTATTCATATGTGGCCTCCTGAATAAGCCAAGCTTAAGAATACTGCTTTTAGTTTGGATATGTTGGGCTGTCGCTATAATAATCCTTGCTTTTGCCATTATCGTTTTCTATCTGACCATCGCACACTCCTTCCTCGATGGTCTACGAGTCTTCATGATTTATGGCATTGGAATTCTTCTTGAGGTTCTTTGCATCTGGGTTGTTGCATCTTACTTCAAGTACTTAGGCATAATGGCTCACGGGCCAGCACAGGGGTACAGGGTTGTTTTTAATTCACGTGGTGCAGAACCACAACAGGTGCATCGAGAAAGACCGAGCATCACCTCAGAGCCTCCATCGTATGCTACATCAGTCCATTCCATGACCTCTCTGGAGATGATCGATGTTAGCAATGGTAGCAAAATTGTTCTAGGATGTGGCAGTAATGTGGTGGATCAATTTTTCAAGGTCCAAGCTCTACCAAAAGTTGGTGAGAAAGGATTCTTTCAAAGCCCTACTCACATAAAAGAGAAGAGCATTGTTGGAGGAGTCACTTTAAATCACTTGTCTTGGGCATCATTACTTGGGGTCCCCACAGGACTGTTGGCCTTACAAGGGGCAGATGTTCCTGGTCGATtgataagaaataaaatgaatcaattGAATATAAGTAAAGATTTCATTCAAGTAAGTGACACATACACAACAGCCCAGTCATACGTTTTCATACAGCAAGATGGTGAAAGGTCAATCATTATGGCATCTGGTGCAACAAGTATCATTAAAAAACATACTGTGGAGGAGTTTTTTGaaGAAGCCGTTCGAAAGAACGCTTTGATGATAACAACTGAAATCTCCCAAGTTCCATTGTCAGgcgtaatggctttgttaaagCTTGCAAAAGATCTGGGCATCCCAAGCGTTCTTGATCTTGACGTTTCACCTTCCGTTGCCATTAATGAAGCGGGTCTGGGAAGTATAGAAGAGCTCAAACAATGTGTCATTATGGCAGATATTTTGAAACCGGCAAAACATGCGGCTGCAGAGATGTTGCAATATCTAAAACCGGATATGAATGGAGGTGGTAAACTTAGCGGAGTTGACGTCGCAAAATACTTGAGAGATAGCTGTAATTCCAAGTTACTTGCAATGACCAATGGAAGCGATTCATCTGTGCTTACCAGTGAAAACCATACAGTTGAGGTGCCCACAGAAAGACTAAAGAATGTCGTTGATGCGACTGGAGCCGGAGATGCCTTTCTTGGTGGTCTCATTACAGGCCTTCATTTTCACGGCATCCCAGAAAGTGAAGATGACATGAGGGAGATTGGTGTACTGGCAAATAAAACTGGAGCAGCTTGTTGTAAAGTTCTTGGTGGGCTACCAAATGACCAGTCCAGGGAAGTGCTGAAGGATGAGATTTTAAAGTATCGAGGTAGCATTGGTGAAAGTGAGAGTGACGAGACTGCCGTTTACAACCCATGTCCAGATTTTGAGAACAGCGTAAATGCTGATTTCGAAGCTGCCCAGGGAGTTCTCGATTTAATGGACTTCCGAACTGTTGCCAAGTTTATTgaattcttggaaaattgcaaAGGGAATGTTTTGGTTTCTGGAATTGGCAAATCAGCAATTGTTGCACAAAGAATGGCAGCATCTTTGGCATCGACTGGTACTCCTGCGCATTTCGTCCATGCCACTGAGTGGGCGCACGGAGACTTAGGTAAAATCAGAAAAGACGATGTTGTCGTGTTCTTCTCACACAGTGGAAACACTGAAGAAGTTAACTATGCCGCTGAACTTGTTCAAAAACATCATATTCCGCTTCTTAGTATCGTCGGTTCGAAAGaCTCTCCATTAGCGCATATGTCTGACGCTATTATCGATTATGTCGTTGGCAAAGATCTACTGGAGCCTCTCGGAGGAGCACCAACATCAAGCATAATAATGCAGGAAATGATGGTCAATGGTATTATATATGAGCTCATACGGCGTCGAAATTTTACGAAAGAAAATTTCCTGTGGAATCATCCTGGTGGATCGCTTGGCAGAAAATTGTCCAAGAAGCTTGGGTATAACATCAGATTTGTGTGA

Transcript

BRAKERKYLT00000026120

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HVW0	Arabinose 5-phosphate isomerase KdsD OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=kdsD PE=1 SV=1
Q83JF4	Arabinose 5-phosphate isomerase KdsD OS=Shigella flexneri OX=623 GN=kdsD PE=3 SV=2
Q8X9J0	Arabinose 5-phosphate isomerase KdsD OS=Escherichia coli O157:H7 OX=83334 GN=kdsD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010226 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01380 all species →	SIS	SIS domain	Domain	Interproscan
PF00294 all species →	PfkB	pfkB family carbohydrate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046348 all species →	Homologous_superfamily	SIS domain superfamily	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR001347 all species →	Domain	SIS domain	Interproscan
IPR029056 all species →	Homologous_superfamily	Ribokinase-like	Interproscan
IPR018506 all species →	Binding_site	Cytochrome b5, heme-binding site	Interproscan
IPR050986 all species →	Family	SIS family GutQ/KpsF subfamily isomerases	Interproscan
IPR011611 all species →	Domain	Carbohydrate kinase PfkB	Interproscan
IPR035474 all species →	Domain	KpsF-like, SIS domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42745 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0097367 all species →	Molecular Function	carbohydrate derivative binding	Interproscan
GO:1901135 all species →	Biological Process	carbohydrate derivative metabolic process	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000026120.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.