Gene detail

Detailed information of BRAKERKYLP00000026572.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: RZD41238.1, hypothetical protein CXT73_05310 [Euryarchaeota archaeon]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000026572

atgacaaataaaGAAGAGCAAGATGCAGCATTCACAAAATCATTGCTTCAAGATGGTGATATATTAAAGGATCAAGATGAATTAATTTTTGATCCTTTCAACTCTAATAACCTAGAAGTAAGTAAAAtacaaattgaagaaatattaAAGCAATATGGTGTACCAGATAATGTTCATAATTTAGAACTTTATAAAAGAGCATTTATTCATAAATCATATGTAAAACGCCCAGaattagaaaataaagaaagggGTATTATTATTGCTGATTGTCCCACTAATTGCTTATcattaaaaacaaaatcaaatgaacGTTTAGAATTTTTAGGTGATGGTGTATTAGAATGtattacaaaatattatttgtATAGACGTTTTCCAAAAGGAAATGAAGGATTTATGACAGAAAAAAAAATTGCTCTTGTTAAAAATGAATCTATTGGTAAAATGGCATATGAAATGGGTTTAAATAAATGGTATATTATGTCAAAAAATGCAGAAGAGAAAAAAACACGTACTAATTTAAAAAAACTCGGATGTTTATTTGAAGCATTTTTAGGGGctttatttttagattttaataaaataacaataaaGGACGAAAAGGGCTGGTTTGATAGTGTTTTTGTTACTGGACCCGGATTTCAAATAGCACAAATATTcgttgaaaatgtttttgaaaaacaTGTTAATTGGACCGATCTATTAGAAAATGacgataactataaaaatatcTTACAAGTTTTGATCCAAAAGGAATTTAAGACAACACCAAATTATGTTGAAATTAATGAACATAATGATGAGGAAGATAATAAAAAACCaccaaaacaacaaaaagaatTTGGTATAGTAATACCAAAAGCACAGGAAGAAAAGGCTGTACCATTAAAAATAAATGTAGTTAGTAAAGTTGGCGAGATAGATAGAGATGATATTATGCGTCGTTTAAAATCAAAAATgatatcaaaaatacataaagAATCCCAAATACTGAGTTCAGATGATAGGGAATTattagaaaaacaacaaaaacagttAAGCGTGGTTGATGAGGGGGATGAGGATGAAGAACCTGTGGCAGTTCCAGAAGAACCTGTGGCGGTTCCAGAAGAACCTGTGACGGTTCCAGAAGAACCTGTGGCGGTTCCAGAAGAACCTGTGGCGGTTCCAGAAGAACCTGTGGCGGAACCAGCAGTAGTACCGGATGAAAAAAAAGAACTACAATCTGATTTACCCGATAAACCCGTTGTTAAGGTAaaaaaaagaattaagaaattgggaaaaattaaaattggaaaaaatgTAACAAGAGGAACAATTACGGTTTTAAATTTAGATAAAAAACCTAAACCAAAGGTAAAAAAACCAAAAGTAAAGGTTCAAAGTGGTGTTACTATAAGGCAGGATATCCCGGAAAATATGATACAAGTCGGAGATACCATATTAGCGGAACGTTTATGGCCTGAACGTCCTGTTGTTATTCATAAAGCTAACCAATATTATttaaataatagaaaaagattTATACAATTTATAGATAATTTATATGAGCCTTACAAAAAGGCATTAGAAGAAGAGTCAAAAGATGTTTCTTGTGATAGAGGTTCGGGTCCATTTTCACTTATGACACATCAGGCAATTATTCGTGATTATATGAATTTATATTCACCATATAGGGGTTTATTGGTTTATCACGGGTTAGGTGCTGGTAAAACATGTTCTTCAATTGCAATCGCTGAAGGTATGAAAAGTGATAAGACAGTTGTAGTAATGACACCAGCATCTCTTAGACCAAATTATTTTGCTGAATTAAAAACTTGTGGAGATGAATTATttaggttaaatcagttttgggaATTTATACCAACTGAAGGCAATGTTGAATTGGAAAATACATTAAGCAATGCTTTAAATTTGCCAGTAAATGTTGCGAAACAACAGGGTGGGTTATGGCTTGTTAATATGAAAAAACAACCTAACTATGAAACTCTTTCAACGCCGGACAAATTACAGTTAAATCGCCAAATTGAAATTATGATAATGAGCAAATATCAGTTCAATAACTATAATGGTATTAATAAAAGAAGATTAAATGAATTAATTGAGTTGGAAGGTGTCACGAATCCTTTTGATAATAAAGTTGTAATTGTAGATGAGGCACATAATTTCGTTGGTAGAATTGttaataaattaaaaaagaaagatTCATTATCATACCAAATAACCTTGGAAGGTATTGGTATTATATCATTGATATTGGAATATAATGGATTTGCGAGATTTAGAATAAAAAAGGACGAAACCGGATCCTGGAAAGTTGCAATACCAGAGGAAGATCGTGCAAAACAGATGTTTGCTTTATATACGGGAACAGAAGAACCAGAGGAAAAAGAAATATTGAGAAATGTTTACAATGGTGCTTGGGACAAAATACCATCAAGTATTAGAGATTACATTACGGGTATTgcagataataataataatggtgaaGTCATTAAAGTATTAATGATTACTAGTAGTGGGGCAGAAGGCATTAATCTTAAAAATACGCGTTTCGTACATATTATAGAGCCTTACTGGCATCCGGTAAGAATGGAGCAAGTTATTGGGCGCGCCAGAAGAATATGTAGTCATAATGCATTGCCAGTGGAAAAACAAGATATCAAGGTATTTTTATATCTAATGACATTtgctaaaaatcaaatattaCCAGCAGAATTGGGTGGTCTAGCAACACAAGAGTTATTGCAAAAAGATACAAGTAAGTTAGATAATAAAACACCTCTTACGAGTGATGAGGCATTACATGAAATATCAACAATTAAAAAGGATATTAATAAACAGTTGTTAATGGCAATAAAAACAACCGCAATTGATTGTTCTCTCCACAAGGATTCGTCTGACAAAGATCCTATTGTTTGTTTATCCTTTGGTAAAACAAATCCGAAAGAATTTACTACCGTACCCCAATTGTCAAACGCAACAACAGATGAAGagtcaaaaattaataaaaaagttatgaaagtagATTATGATGTAATTAAAATACAAGGAAAAAGATTTGCTATTAAATTAGATCAGCGTAAAAAACCCTTATCTTCATTTGAAGTTGGTTCTTTATATGGTGAATTATATGACTATGATAGTGTTATTCAGGTACAAAGAGGTGAAAGAGAGCAGCCGCAGTTTAAGGGATATTTACGTGTTGTTGCAAACAGCGAAGGAAAGAAAATGCTTAGAAAAGTAGACgaataa

Transcript

BRAKERKYLT00000026572

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T6X3	Putative ATP-dependent RNA helicase R563 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R563 PE=1 SV=2
Q82ZG1	Ribonuclease 3 OS=Enterococcus faecalis (strain ATCC 700802 / V583) OX=226185 GN=rnc PE=3 SV=1
Q0SMF0	Ribonuclease 3 OS=Borreliella afzelii (strain PKo) OX=390236 GN=rnc PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002885 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF14622 all species →	Ribonucleas_3_3	Ribonuclease-III-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000999 all species →	Domain	Ribonuclease III domain	Interproscan
IPR036389 all species →	Homologous_superfamily	Ribonuclease III, endonuclease domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11207 all species →	RIBONUCLEASE III	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004525 all species →	Molecular Function	ribonuclease III activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000026572.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.