Genomic Location: SCAFFOLD_755:12451...13736
NR annotation: MAP74238.1, mannitol-1-phosphate 5-dehydrogenase [Planctomycetaceae bacterium]
Species Mastigias papua · all data for this species · gene families
| CDS |
| BRAKERKYLT00000026612 |
| Transcript |
| BRAKERKYLT00000026612 |
| Protein |
| BRAKERKYLP00000026612.1 |
| UniProt accession | Description |
|---|---|
| Q0UEB6 | Mannitol 2-dehydrogenase OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=SNOG_09898 PE=3 SV=1 |
| P0CX08 | Mannitol dehydrogenase DSF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DSF1 PE=1 SV=1 |
| P0CX09 | Mannitol dehydrogenase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MAN2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0028153 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08125 all species → | Mannitol_dh_C | Mannitol dehydrogenase C-terminal domain | Domain | Interproscan |
| PF01232 all species → | Mannitol_dh | Mannitol dehydrogenase Rossmann domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR023027 all species → | Conserved_site | Mannitol dehydrogenase, conserved site | Interproscan |
| IPR013118 all species → | Domain | Mannitol dehydrogenase, C-terminal | Interproscan |
| IPR008927 all species → | Homologous_superfamily | 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily | Interproscan |
| IPR013328 all species → | Homologous_superfamily | 6-phosphogluconate dehydrogenase, domain 2 | Interproscan |
| IPR013131 all species → | Domain | Mannitol dehydrogenase, N-terminal | Interproscan |
| IPR050988 all species → | Family | Mannitol Dehydrogenase/Oxidoreductase | Interproscan |
| IPR000669 all species → | Family | Mannitol dehydrogenase | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43362 all species → | MANNITOL DEHYDROGENASE DSF1-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0019594 all species → | Biological Process | mannitol metabolic process | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0016616 all species → | Molecular Function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
BRAKERKYLP00000026612.1.Genes whose expression across the transcriptome samples of Mastigias papua tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Mastigias papua, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
