Genomic Location: chr1:35233511...35236245
NR annotation: XP_020630916.1, uncharacterized protein LOC110067909 [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families
| CDS |
| BRAKERLUST00000000088 |
| Transcript |
| BRAKERLUST00000000088 |
| Protein |
| BRAKERLUSP00000000088.1 |
| UniProt accession | Description |
|---|---|
| A4XU32 | Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Ectopseudomonas mendocina (strain ymp) OX=399739 GN=Pmen_2087 PE=3 SV=1 |
| Q5P203 | Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Aromatoleum aromaticum (strain DSM 19018 / LMG 30748 / EbN1) OX=76114 GN=AZOSEA25360 PE=3 SV=1 |
| Q0A9G6 | Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=Mlg_1172 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008821 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03737 all species → | RraA-like | Aldolase/RraA | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005493 all species → | Family | Ribonuclease E inhibitor RraA/RraA-like protein | Interproscan |
| IPR036704 all species → | Homologous_superfamily | Ribonuclease E inhibitor RraA/RraA-like superfamily | Interproscan |
| IPR010203 all species → | Family | Regulator of ribonuclease activity A | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR33254 all species → | 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008428 all species → | Molecular Function | ribonuclease inhibitor activity | Interproscan |
| GO:0051252 all species → | Biological Process | regulation of RNA metabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02553 | rraA, menG; regulator of ribonuclease activity A | - | Messenger RNA biogenesis | ko03019 | deepkoala |
Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
