Gene detail

Detailed information of BRAKERLUSP00000001640.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: XP_020601384.1, splicing factor 3B subunit 3-like [Orbicella faveolata]
Species abbreviation BWELL · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000001640

ATGCATCTGTACGCATTAACTCTCCAGAAAGCATCAACCATCAATCATGCAATTCACGGCAACTTCTCAGGCTCCAAGCAGCAAGAGATTGTCATCAGTAGAGGAAAGATAATAGAGCTTCTTCGTCCTGACCCAAATACTGGTAAAGTGTTTCCATTGTTAGCGATGGAAATGTTTGGTGTTATCCGAGATCTTATTGCATTCAGGCTCACTGGAGGATCAAAAGATTATGTTGTGGTTGGAAGCGATTCTGGAAGAATTGTGATCCTTGAATACATTCCATCTAAGAACACCTTTGAGAGGATACATCAAGAAACTTTTGGTAAAAGTGGCTGTCGCCGTATTGTTCCAGGCCAATACTTAGCTGTTGATCCCAAAGGACGAGCTATAATGATTGGTGCTGTGGAAAAACAGAAGTTGGTTTATATCCTTAACAGAGATGCGGCAGCTCGCCTGACAATTTCATCTCCACTTGAAGCTCATAAGTCTCACACGTTGGTTTATCATACTGTGGGTGTGGATGTTGGCTTTGAAAATCCAATGTTTGCTTGCTTGGAGATGGATTACGAGGATGCTGACAGTGATCCAACTGGAGAGGCCGTACATACAACTCAACAAACTCTGACGTTCTACGAGTTAGATCTGGGCTTGAACCATGTGGTGCGCAAGTATAGTGAACCTCTTGAGGAACATGGAAACTTCCTTATTCCTGTTCCAGGAGGAAATGATGGTCCAAGTGGCGTGCTGGTCTGCTCTGAAAACTATATCACTTACAAAAATTTTGGCGATCAAGTAGATATCAGAATGCCTATTCCACGACGAAAGTATGATCTAGATGACCCAGAACGAGGaatgatttttgtttgcagtgcTACTCACAAGACAAAGTCTATGTTCTTCTTCTTGGTGCAAACGGAACAGGgtgacatttttaaaattaccaTGGAAGTTGACGAGGACATGGTAACAGAAATCCGTATGAAGTATTTTGACACCGTTCCTGTGGCTGCTGCCATGTGCGTTCTGAAGACAGGTTTTCTTTTCTGTGCTTCTGAATTTGGAAACCACTACTTGTATCAGATCGCACATCttggtgatgatgatgaggagccTGAGTTCTCCAGTGCAATGGAGCTGGAGGAGGGGACCACTTTCTTCTTTACTCCTAGAGGCCTCAAGAATTTGGTACTTGTGGATGAGATGGAGAGTTTGTCTCCTATAATGTCATGTCAGATTGCTGATTTGGCAAATGAAGACACCCCTCAGTTGTACGCTGCCTGTGGCAGGGGACCTCGTTCATCCATGAGGGTTTTGAGACATGGTCTGGAGGTTTCTGAAATGGCTGTATCAGAGCTTCCAGGTAATCCCAATGCTGTTTGGACAGTCAAAACACATTCTCAAGACGAGTTTGATTCTTATATTGTGGTGTCCTTCATAAACGCTACTTTGGTGTTGTCGATTGGTGAAACAGTTGAAGAAATCACTGATAGCGGTTTTCTCGGCACCACACCCACGCTATCGTGTTCACAGCTTGGCGAGGAGGCCCTGCTACAGGTTTATACTGACGGTATTCGACACATTAGAGCTGACAAGCGTGTAAATGAATGGAAAACTCCAGGAAAGAAGACCATTGTGAAATGTGCAGTGAACGAAAGACAGGTCGTCATTGCGTTAACTGGGGGAGAAATTGTATATTTTGAGATGGATCCGtctggACAACTAAACGAGTACACAGAACGAAAGGAAATGTCTTCAGATGTACAATGCATGGCTCTTGGGACAGTGCCCGCGGGCGAGCAGCGCTCCAGGTTTCTGGCCATTGGCCTGAGTGATAATACCGTGCGAGTCATATCCCTTGACCCGCAGGACTGTCTACAGCCACTCAGCATGCAGGCTTTGCCTGCAACACCTGAGTCACTGTGTATTGTGGAGATGGCTATGGGAGGATTGGAGAGTGAATCAGGGAGACTTGGAGGACTTTTTCTAAATATTGGATTGTCTAATGGTGTTCTTCTTAGAACAGTTCTGGATCTAGTGACAGGAGATTTGTCCGATACTAGAACGAGATACCTTGGTTCCAAAGCTGTCAAGTTGTTTAAAGTTCGAATGCACGGATCTGATGCAGTTCTTGCCATGTCAAGTCGCTCATGGCTGAGCTACTCGTACCAATCTCGCTTTCATCTTACTCCATTATCGTACGAGACACTAGAGTATGCTTCCAGCTTTTCTTCTGAACAGTGCCCTGAGGGTATCGTAGCTATCTCTGCAAACACGCTAAGgATTTTAGCTCTGGAGAAGCTGGGTGCAGTGTTTAATCAAGTGGCAACTCCACTACAGTACACCCCTCGAAAGTTTGTCATCCACCCCCAGAGCAACAATTTAATCATCATAGAAAGCGATCACAATGCATTCAGTGATGCAGTCAAGGACGAGAAAAAACAGCAAATTGCTGAGGAAATGGTAGAAGCAGCCGGTGATGATGAGAAGGAACTTGCGGCACAAATGGCGGCCGAGTTTCTCAACGAGGATCTGTCGGAGCAGCAGTTCGGTGCTCCTAAAGCCGGACCCGGAATGTGGGCCTCCATTGTGAGAATGCTGGACCCTATCAAGGGTGAAACAATTGACGAAGTGCGGCTGGAGCAGAACGAATCCGCTGTTAGTGTGTGCGTGTGTAATTTCACATGTCGGCCTGATGAGACTTACGCTTTGGTCGGCACAGCCAAGGACTTGACACTGAACCCGCGGTCATGTGCAGGAGGCTTTATTCACACGTACAAGATAGCTGAGCTAATTGATGGAGGATACAAACTGGAGTTTGTTCACAAGACGGAAGTCGATGATATTCCAGGAGCACTAGCTCCATTTCAGGGCCGCCTTTTAGCTGGTGTTGGTCGTCTGTTAAGAATCTATGATCTGGGAAAGAAGAAGCTCCTCCGTAAATGTGAAAACAAGAAACTGCCAAACTTTATCATGGGCCTCAGTACAATGGGAACTCGAATTGTTGTGAGTGACATTCAAGAGTCGTTTCACTTCGTCAAGTTCAAAGCACGGGAAAACCATTTGGTGATATTTGCAGATGATGTGAATCCAAGATGGTTAACCTGCAGCAGCTATGTGGATTTTGATACTGTGGCAGGAGCTGATAAATTTGGCAACGTCTTTGTGGTTCGCCTCACGTCTAACACAAATGACGATATTGATGAAGACCCGACGGGCACAAAGGCATTCTGGGATCGGGGACTTTTGAATGGCGCTCCTCAAAAGGTGGAGACGCTGTGTAATTACCACGTGGGTGAAACAGTTCTTTCCCTGCAAAAAGCTACTCTTATCCCTGGAGGGTCGGAGTCTTTAGTCTACACCACCTTGTCAGGAGGTATCGGCATGTTGGTGCCGTTCACGTCAAGAGAGGACATTGACTTTTTCCAGCACCTTGAGATGCACTTGCGAGCAGAACAACCGTCTCTCTGTGGGAGAGATCATTTGTCCTACAGATCTTACTACATGCCCGTCAAGAGTGTGATAGATGGTGATCTGTGTGAATATTTTAACTCTCTGGATTCTTCCAAGCGACGCAGCATTGCTGAAGAACTTGATCGTACACCAGCCGAGGTTTCCAAGAAATTGGAAGACATAAGAACGCGGTACGCTTTCTAG

Transcript

BRAKERLUST00000001640

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0JN52	Splicing factor 3B subunit 3 OS=Bos taurus OX=9913 GN=SF3B3 PE=2 SV=1
Q15393	Splicing factor 3B subunit 3 OS=Homo sapiens OX=9606 GN=SF3B3 PE=1 SV=4
Q921M3	Splicing factor 3B subunit 3 OS=Mus musculus OX=10090 GN=Sf3b3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004170 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DDB1 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03178 all species →	CPSF_A	CPSF A subunit region	Repeat	Interproscan
PF10433 all species →	MMS1_N	Mono-functional DNA-alkylating methyl methanesulfonate N-term	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050358 all species →	Family	RSE1/DDB1/CFT1/CPSF1	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR004871 all species →	Domain	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	Interproscan
IPR018846 all species →	Domain	Cleavage/polyadenylation specificity factor, A subunit, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10644 all species →	DNA REPAIR/RNA PROCESSING CPSF FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005686 all species →	Cellular Component	U2 snRNP	Interproscan
GO:0030620 all species →	Molecular Function	U2 snRNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12830	SF3B3, SAP130, RSE1; splicing factor 3B subunit 3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.