Gene detail

Detailed information of BRAKERLUSP00000004272.1 in Blastomussa wellsi

Genomic Location: :...
NR annotation: XP_020600788.1, uncharacterized protein LOC110039944 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERLUST00000004272

ATGACGCCATCAAACGGACTTTACTATACTTCAGTTGGTAAAGCTACAGCGGATAAAGCAAGATTGATTGTTCGGGAATTTGGCTTTTCTCCAAGCGGTCATGGCTTGTTACACAACTATTCAAATGATGTCCACGAAAATGTCCATCGAGAACCTTTTATGTTTTCTGCTGTAACTGAATCTCTAGTTGAAAATATCGTTAATGGTCTGCCTTCGAATAAAGCTCCTGGTGCCGACAAAATTACATCTAGAGTTCTTAAGGATAGCCTTCCTGCAATACTCCCGATAATCACGCATTTGTTTAACAAGTCGTTTGCCACTGGTACTTTTGCACGATCGTGGAAAATGGCTGAAGTCATACCTGTTCCCAAGTCTGGCGATTTCAACGAACCAGTAAACACGCGTCCTATTTCCTTACTTCCGATATTATCGAAGGTCTGTGAAAGACTCGCCCATCGTCAATTCGTTGATTTTCTGAATCGCTCTGGAAAAATCTCAAAGTTTCAAAACGGGAATCGTGAATTACACTCTACCGAGACGGCTCTACTTCAATTTACAGATGACATTTTAAAGAATATGGATGAGAAGAAAGTTTCATTGATCGTGTTATTAGATATGTCGAAGGCTTTCGACAGCATTCAGCATGAGCGCCTACTTATGAAACTCCGTAAAATCGGCATCTCCACTGCTGCCTGGACCTGGTTTGAAAGTTTCGCGCCAAGTTCGAGAGGCCCCAGTGCACGGGCCCCTACAGGAATCCAGACAGGTCAGCAGCTTGGGGCCGAACGGATTAAACCTGCTGAACCAGAGTCCACACGATATGTTGACCTTCTAGTTTGCCAAGGCTACGTTGTGGAAATATTAGGCGGAAAGCACTTCAAGACTGCTGAGGGAGAATTTGTGGAAATGAAAAGCGGGACACAGTATAAGATCCATGTGAAAAACACGCATGCCTACGGTTGCAATTTGGATATATCCATTGACGGTTATGACGTAGGAGGGTGGGTTTTGGATGGAGGACAAGAGTTCACGATAGAGAGGCCAGCTTACGAAGCAAAGAAATTCACCTTCTACCGCGTAAAAACCGCCCCTAAAGAAGCAGGCATAGATTCAGGCCGACCCGAAAATGGTGTTGTGAAGTGTATTTTCACACCCGAAGCCTTCTTAGAAATTCCGGTGATTATTTCTGATTCTCCTCAGCCGCTGAGTTTTAATGTACCTCCATCCGCAACAGTTGGTGATCTAAAACGACAAGTACAGCGCCAGTTGAGAAGAATCGATGATCCTGACCAAGTTTTTTGTTCAGATAACACGGTTTTGTTAAACTCCTCTTCGGTGAGGCATCTACCTCCAGGAGGTGTAAAGCTAATCGACACAGAGCTTGAGATTACAATCGAGGCATCTTCGAAGGAAACACTTGCAGTAAAAGTGCATCCAGGTCGAGCAAAGGTGTGCGATGTTATGGAAGAAATAGAGAGAATGCTCGAGGTTCCTATTGGGGAGCAAAAGCTGTACCTCGGAAAAACACGTCTTTCAGACACACCAATGGCTGGCCTTCCTCAAAAGCTCATTTGCAATCCAAAGCCAACTATTATAGTCATTGTACCAGAGTTTATAGATATAACTGTAGAAGATCAGAATGGAAAATCAATCGCCATGAAGGTAGATAAAGAAAAGGGACTAACAGCGTTGATGGAAGAAATATCGTCGCGTATAAATCTACATGAAAACGAAGAAGCTCGGGTTTATTTCAATGGGAGGCAACTCTTTCCTCTCAAAGATAAAGGAACGTTATCAAACCTTGGCCTGTGTTCTGGATCAAAGTTGGAGCTGAAAGTGGAAATTCTCTTCATTGAAATTAGTGTTTGGTTTCCAGATGGATCACCAACGATTAGTGTGAGATGTAGTCCCCAAGAAACATTCAAAGACGTGATGGAAAAGATAGCAAAGAAGATAAAGAAGAAAAAGCTTGGGAGTGTTACATTTGCAGTGgacgagaaagtttttgatccGGACCAAGACAAGGGATTACTGCAGGaATATGGAGTGACGCATTGTTCTGTTATTGAGATGAGGATGGGAGAGCCTAAATCAAATGCCGACGAGAGGTAA

Transcript

BRAKERLUST00000004272

Protein

Uniprot

Gene family

Uniprot term	Description
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan