Gene detail

Detailed information of BRAKERLUSP00000005378.1 in Blastomussa wellsi

Genomic Location: chr10:20370234...20379891
NR annotation: XP_020603038.1, transmembrane and TPR repeat-containing protein 4-like [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERLUST00000005378

ATGGCGCGTTTACAAAATTTAAACAGAAAACATTCGAAAGAAACTGGAAAATCATCGAATCAAACACCCAATTTGAAATCTTACCTTCTGGTAGGGATCACGGCAATTGCGTGTTATTTCAATTCCCTGTTTGGCGAATTTGTTTACGATGACTACGAAGTTATTGAGACGAATGCAGATATCAGACCTTCATCTCCCATTTCCAACTTGTTTACAAACGACTTTTGGGGCCTTCCTTTGAAAAGAAATGACTCGCACAAATCATACCGTCCTATCACTGTTCTTACATTTCGTTGGAACTTTCTTCTTGGAAGCCTTAATCCGATAGGTTATCATCTAGTTAATGTACTTCTACACGGTATAGCGTCCATGTTATTTCTTCATTTATGCACTCGGATTTTTAACAGCTGCGTTCGTTCACAAACTAATTCATTGTCTCCACTGTGTGGATTATTTTTCGCGCTTCATCCAATTCACACAGAGGCTGTAGCGAACGTTGTGGGTCGCGCGGATATTCTCTGTGGAGTTTTCTATCTTCTTTCGTTGTTGTCGTACTTAAACTGTTTTCCTGAGGGAGCTacaaaagacaactttaaaagagcGGCAAAGTATTCAAGGCTTTGGCTTGCTGCCAGTATTTTTTGGTGTGTGTTATCCCTGTTCAGCAAAGAAAACGGCATCACAGTTCTTGGTATTTGTGTTGTGTATGACATTGTATTCGTCTGCAAATTCAACGGAGGACATTTCCTGCGAGCCTTGTTTTCGCCTACAGTGTTATTTAGTTTCAGACAGTGGCCAAAGTGGGCTGTGCGCGTGGTTGAAAGAGTTTCTATTTTAGTTTTTGTGGCTGTAATTCTCCTTTACTTAAGAATTGTGACTATTTCTGGAGGATTTGCACTTTCTTTTACCGAGTCTGATAATCCAACGTTATTTCACCGTGAGATTTGGACACGCTTTAGAACATACTTGTACTTATGCGCATTGAACACGCGCCTTCTTCTGTGTCCGAACATACTGTGCTATGATTGGTCCATGGATAGCATATCCCGGATTGAATCCTGGTGGGACATGCGCAATGTGGAAACACTTGCTTTAAGTGTTGTTTTGACTTGGCTGTGTTATTACGGTTTAAAATCTTTTCATACGTCATTCTCGTCACCTGGAAAGACTGAAAAGCCTAAGCTATGTTCCTCAAATTCTTTAACACTAGATGCTAACGAAAATAATATGCACGCGCGAAAGGAAATGAAAATTAAAGAGCCACGGAATTCTGGAGAAAAGACGCTATTGAACGAATTTGATTCTCTACACAGAAGACGAGTTGTGATGTTTTCATTAGCTATGTTGGTCATTCCATTTCTACCAGCATCCAATCTCTTTCTCCCTGTTGGATTTGTCATCGCTGAACGAATCCTTTACATTCCAAGTATGGGTCTTTGCATTCTCGTCCCACTTGGAATTTCAATCTTGTTTCAAAACTCCACGAAAGAAGATTCCTTAACTCAGGAGGACTGCAACGACAATGTCAGGGAAGAAACTTCGACAATAAGCTGGTCTTTTGGCCTCAACACCACTGGCATTGTGTTTGTCTACAGTCTTTTGTTAGTGTTTGCTTGCAAAACAGTACACCGTAATTCAGAGTGGCGAAATAAGGAGACTCTTGCCAGATCAGGACTCAAAGTGAACCCTTCAAACGCCAAGATCCATGCTATGTTAGGAAATGTTTTAGCAAAGAAGGGCCTGTTGGCTTGTGAAAATCATTACCGCGAGGCTTTGCGCCTACGGCCACATTACGTAGCGGCCTTGGAGAACCTGGGACTAGTACTCCTTAACACAGAAAGAGCCCAGGAGGCCGAGAAATGCTACGTAAAAGCCCTGTCAATCAAACCTAACAGCGCTGACGGCAACATAAACCTTGCGCACTTGTTGCGTGTGACGAGAAGATTCAACGAAGCGGATGTTCAATACCAAAAAGCGCTGTCTCTTAGACCGAACAACCCACAACTCAATTACTTTCATGGAGTGGTTCTGGAAAGACTTGGCAAACGAAAGAAAGCAGAGGAAAGATATATCAAGACAACAAAGTTGACTCCAACGGATCCAATACCTTTCCTAACACTTGGAAAGATGCTTGTTCTCCCGGCTTTgcagaaaaaagtgaaaaatggaAGCGAACGAGGAATACAAAAGGGAGAGGAGTACTTACGGAAAGGATTGACGTTAAAACCTTCGGATCTTGATGGCCGTTTAATGCTTGTTCAAATTCACCTTCTGAAGGGAGAACTTAACTCTGCTGAATCCGAGGTTCGTTATGTACTCGCTCGTGATGTCAACAGTAAAGAAGCTGAGTTCGTCCTCGGAAGAATTCTGGAGCTCAAGGGCTCTCTGAAAGAAGCCAGACATTACTTTCAACAAGTGCTTAAGAAAGATTACATGCACACTGGCGCCAGAGAGGCTTTACAAagattaaataaaaaattctaa

Transcript

BRAKERLUST00000005378

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DCD5	Protein O-mannosyl-transferase tmtc2 OS=Xenopus laevis OX=8355 GN=tmtc2 PE=2 SV=1
Q8BG19	Protein O-mannosyl-transferase TMTC4 OS=Mus musculus OX=10090 GN=Tmtc4 PE=2 SV=1
Q5T4D3	Protein O-mannosyl-transferase TMTC4 OS=Homo sapiens OX=9606 GN=TMTC4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000831 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08409 all species →	TMTC_DUF1736	Protein O-mannosyl-transferase TMTC, DUF1736	Family	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR013618 all species →	Domain	Protein O-mannosyl-transferase TMTC, DUF1736	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052384 all species →	Family	O-mannosyl-transferase TMTC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44216 all species →	PROTEIN O-MANNOSYL-TRANSFERASE TMTC2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000030 all species →	Molecular Function	mannosyltransferase activity	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23424	TMTC; protein O-mannosyl-transferase	EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →