Genomic Location: chr10:21918104...21919371
NR annotation: XP_020604729.1, vascular endothelial growth factor C-like isoform X2 [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families
| CDS |
| BRAKERLUST00000006509 |
| Transcript |
| BRAKERLUST00000006509 |
| Protein |
| BRAKERLUSP00000006509.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000539 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03128 all species → | CXCXC | CXCXC repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000072 all species → | Domain | PDGF/VEGF domain | Interproscan |
| IPR004153 all species → | Repeat | CXCXC repeat | Interproscan |
| IPR029034 all species → | Homologous_superfamily | Cystine-knot cytokine | Interproscan |
| IPR050507 all species → | Family | Platelet-derived/Vascular endothelial growth factor | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12025 all species → | VASCULAR ENDOTHELIAL GROWTH FACTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008083 all species → | Molecular Function | growth factor activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0001666 all species → | Biological Process | response to hypoxia | Interproscan |
| GO:0001934 all species → | Biological Process | positive regulation of protein phosphorylation | Interproscan |
| GO:0001938 all species → | Biological Process | positive regulation of endothelial cell proliferation | Interproscan |
| GO:0002040 all species → | Biological Process | sprouting angiogenesis | Interproscan |
| GO:0005172 all species → | Molecular Function | vascular endothelial growth factor receptor binding | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0038084 all species → | Biological Process | vascular endothelial growth factor signaling pathway | Interproscan |
| GO:0042056 all species → | Molecular Function | chemoattractant activity | Interproscan |
| GO:0045766 all species → | Biological Process | positive regulation of angiogenesis | Interproscan |
| GO:0048010 all species → | Biological Process | vascular endothelial growth factor receptor signaling pathway | Interproscan |
| GO:0050930 all species → | Biological Process | induction of positive chemotaxis | Interproscan |
| GO:0060754 all species → | Biological Process | positive regulation of mast cell chemotaxis | Interproscan |
BRAKERLUSP00000006509.1.Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |