Gene detail

Detailed information of BRAKERLUSP00000010036.1 in Blastomussa wellsi

Genomic Location: :...
NR annotation: KAJ7382837.1, hypothetical protein OS493_032473 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERLUST00000010036

ATGGAAGCAACCCCTAAAGcagaaaaacaacaacgcaGCTCGACCGGCACTTTGCACAAAGTAGTGATATTTGTTGTGGTGCTGGGGATCTGCGCTGGTTTTTTTGTCGGGTTGGAGCTGTTAAGAAGACGTTTGAATGCACTTGAAGAGACTGTCAATGGCTTGAGAGAGGTCTGCACCCACCCGGAAAGCCATTCATTCCAGAGAAATCGCCGAGACACTCCAGCTATACCTCTGACTTTGGAGGACGTCCGTAGCGAAATTCAAATTCAGCTCCGCTCGATAACAGCATCTCAGCTATGCTCTCCGGCAGAAAAAATTTGTTTGGCGGGCCCGCCTGGACCAAAAGGTGAACGAGGATTGAAAGGAAGACGAGGAAAGAAAGGTGTCATTGGTATAAAAGGCGACCATGGACCCGAGGGATTTAGTGGAATGAATGGAATGCCTGGTCCAAAGGGAGAGAGGGGCGACAGGGGACTGCTTGGACCCCCTGGGATAAGAGGTGCCATCGGGCCCCCAGGATATGATGGTGTTAAAGGGGAGCAAGGAATGGACGGCTTAACAGGACACCCAGGGATGAAGGGTGTAAAGGGTGACTTAGGAATGCCGGGAATGCAAGGCCCAAAGGGTGACGCAGGGGACCCAGGAATGAAGGGTGACCCTGGAATGCCAGGAATGTCAGGCCGAAAAGGCGACATAGGGGCCCCAGGATTTGATGGCATGAAAGGAGATCCAGGGATGGACGGCTTAACAGGACCCCGAGGGTTTAAGGGTGTAAAGGGTGGCCCAGGAATACGGGGAATGAAAGGCCCAAAGGGCGACGCAGGGTACCCAGGAATGAAGGGTGACCCAGGAATGCCAGGAATGCCAGGCCCAAAAGGCGGCATAGGGGCCCCAGGATATAATGGCATCAAAGGAGATCCAGGGATGAAAGGCTTAACAGGACCCCCAGGAATAAAGGGTGAGCCCGGAATGGCACTAACGCGAGGCCCAAAAGGCGACCAAGGGCCCCCAGGGTATGATGGAATCAAAGGAGAACCAGGGATGGACGGACTTATAGGACCCCCAGGAATAAAGGGTGAAACAGGAGCTGACGGGATGCCTGGACCAAAAGGCGAGCGCGGAGAAGACGGCGGCGAAGGGTCCTCAGGAAAAGGGTCCGCTGGAAAGGCCCCTGTTATCTATGTCTCTCCGAGCGCTATGACTGTCTTCGAAGGATCTCAAGTGACGTTCAATTGCTACGCTATTGGACAGCCGGCTCCTACTGTCAGGTGGGAAAGAGTGGGAAAGGGGGAAGCTCCTCGAGGTCGCTCGGGTGTGCTGACGATTACCAAGGCTCAGTCGTGGCACTCGGGAAAATACAAGTGCAGGGCGTTCAATTTGTATGGAATGAAGGAGGTCACAGTGGAATTAAAGGTTGAAGGAAAGCCAGTGATTCTAGAGGTGTTTACAAGCCGAAGTCGGAAGATATCAGTTAATGCCTACGATGACGTGACAATGTTTTGTCAGGTGAGCGGTTATCCCGCACCGAAAGTAAAGTGGTTTAAAGATGACAAAACTAACCTACCGGAGGGCAGAACGGAATTCCGGAACGATAGCATCTTTATCCGTGAGATTCATGCGGAGGAATCTGCAACATACGTTTGCAGAGCTCAGAATATTTATGGCTCTGTGGAGATGAGGTATCCAGTGACTGTCACACCAAGAAGTGGTCGTGGCCGTGAAGATGCAGTGAGGAGCTGCAAAGAGCTGAAGGCGCAGATTCCAAGCAGCTCGTCCGGGAAGTACTGGATCGACCCAGACCTCGGCGCCCCTGACAACGCTTTTGAAGCTTACTGTGAGCAAGAAACGGACGGCGGAGGCTGGTTGCTAGTGTGGAGCTATCGGTTCGATAAGCGTTATCGAGGATTGATGATTCCACGGCCGTCATTTCCTGCCCGTAGCGGTTACTACGCGCACATGAATGTTCTATCTACCACACCCCCCTTGGACCCATCTTCCCCACAGGGGGGAGCGATGAATTTCAGTCTGTGGAAAAAGTTTGGTACAGAGATGCTACTCAAGTCAGACCTGATTAACTGGTACATCTGCAAAGACGGTTCCGGTAGCATTTTGAAGTGGGAGAGGGGCAGCATATCCTGCCGCGTGGCTAAAACTTTGGTGGCAAAGTGCAAGGACAAAGCTCCGAATCAATTTGAAGGTGACGTCAATTCTGGGATGGCACTTACCGACGGGCCGAAATACAGATACCAGTATTTCTACAAAGTGGTGGTAATGGGTGATAACTGGACAGTTGGCAGACGGTTGGTGGATTCCTGCGCAAACAACGATGAAAACTTCGTCAAAGGATTGAGCGATCCTCGAGGTGCTTGGTTCGTCCGTTAA

Transcript

BRAKERLUST00000010036

Protein

Uniprot

Uniprot term	Description
Q7ZW34	Contactin-5 OS=Danio rerio OX=7955 GN=cntn5 PE=2 SV=1
Q90W79	Contactin-5 OS=Gallus gallus OX=9031 GN=CNTN5 PE=1 SV=1
O94779	Contactin-5 OS=Homo sapiens OX=9606 GN=CNTN5 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050149	Family	Collagen superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0030020	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19719	COL2A; collagen type II alpha	-	Glycosaminoglycan binding proteins	ko00536	deepkoala