Gene detail

Detailed information of BRAKERLUSP00000012003.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: XP_020621932.1, hemicentin-2-like isoform X2 [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000012003

ATGTTCAGTTCACATGTTCCACCAAGTTTTACAACAATACCAATTAACCAGACTGTTAACGAAGATGACCTAACCATATTCCATTGTGCTGCCACTGGGAACCCAACCCCCAAGATAACATGGATAAAAGATGGGAGGACTGTGGGTGAAGGAGATCCACTGAGCTTTGAAACCAGCAGGAATCATTCTGGGAAATACTGGTGTTCAGCAGAAAATGGACTGGGTCTTGCTATTAAGAAGAGTGCTTACCTTAATGTGCAGTTTGCTCCAGTTCTGACCACATATCCGACCAACCAGACTGTTATGGAGGGTAACATGGCAACATTCCATTGTTCTGCGTCCGGTAATCCAGTCCCGACGATAACATGGATCAAAGATGAACGGACTGTTGAGACAGGAGAAATGTTATCCCTTAAAGCCCGCAAAGACCACTCTGGAGAGTACTGGTGTATTGCAGACAATGGTTTGAGCAACACTGCCAACGCTAGTGCTTACCTCGATGTGCAGTttcCACCAAGTTTTATAAATGTACCATCAGACAAGACTGTTAAGGAAAATGATGAAGTTACATTTTACTGCAATGCCACTGGTAACCCAACCCCGAAGATAATGTGGCTAAAAGACGGGAAGGCTGTGGCTTCTGGAGAAACGTTAAGGTTTGAAACCAACAGGAATGATTCTGGACAATACTGGTGTTCAGTAGAAAATGGATTGAACGTGCATATCAATACCAGCGCGAGTCTTGACGTGCAGTTTTCACCAAGTTTCACTCTGGAACCAACGGACCAAACTGTTTTTGAGGGTGACTTAGCAGTATTCTCTTGTGCTGCCACCGGTAACCCAGCACCAAAAATTACTTGGATTAAGGATCGGAAGACTGTGGCTATCGGGGACACGCTGAGTATTGAGCCCTTTAGGAATCAATCTGGAAGATACTGGTGCTCGGCTGAAAATGGCTTGAATGTGGCTGCCAATGCAAGTGCTTATCTTGATGTACAATTTCCACCAAGCTTTACAACAACACCAATAGATGAGACAGTCCTGGAAGATGGTGAAGCTATATTCCATTGCAACGCCACTGGCAACCCAACTCCAACGATAACATGGATTAAAGATGGGAAGAATGTGGCTCTAGGCGATATTCTTAGCTTCAAAGCCAGCAGAAATCATTCTGGAAAATACTGGTGTTCGGCTGAGAATGGATTGGGCGTGGATATCAATGCCACTGCTTCGCTTGATGTGCAGTTTCTGGTGAGTTTTACGTCAACTCCAGTGGATCAAACTATCAGAGAAGGCGATGAAGCTACGTTCAACTGCACTGCCAAAGGAAATCCAATTCCAAAGATAACATGGCTGAAAGATGGAAAGATGGTGGATGCTGGAAACACATTGAGCTTCACAGCTAGCAAGAATCAATCAGGAAAATATTGGTGTTTAGCAGAGAATGGGTTGGATTTGAGTATAAACGCTAGCACTTTGCTTGATGTGCAGTTTTCACCAACGTTCATTACAAGACCAGTTAGCAAAACTGTCACTGAGGGTACCAGAGCAACACTATATTGTGAAGCCACTGGGAACCCAACCCCAAAGATAACTTGGATTAAAGATGGGAAAACTATGGACACAGGAGATACACTGAGCTTTGAAACCGACAGGAATCACTCTGGAAAATACTGGTGTTTAGCAGAGAATGGATTGAATCCAGCTGTCAATGCTAGTGCTAGCCTAGACGTACAGTTTCCGCCCGGCTTTACAACCAAACCTGTTAACCTAACGGTAAATGAAGATAATGAAGCTACTTTTCATTGCTCTGCGACTGGTAACCCTGTGCCGAGCATTAAGTGGATCAAAGATGGGCAGACTGTGGCTACAGGAGACACGCTGAAGTTTAAAACCAACCGGAGTGATTCGGGACAGTACTGGTGTTCAGTAAAGAATGAATTGGATGTGGAAATCAAAGCTAGCGCTCAACTGAATGTTCATTATCCACCAAGTTGGATCATGCGACCATCTGGTGAGACTGTTATCGAGGGCTCTGTGGCAACATTCCATTGCAATGCTATTGGAAATCCTGTGCCAAATATCGCGTGGATAAAAGATGGGAAGACTGTGGAAACAGGAAACACACTAAGCTTTAAAACGTCGAGAAATCAGTCTGGAGAGTATTGGTGTTCAGCTAAGAATGATCTTCAAACTGTCAACACAAGCGTCAACCTTGATGTTCAATTTCCTCCAAGTTTTACAAGCAAACCAAGTAACCAGATAGTAAAAGAAGGAGATGAAGCCATATTTCACTGCACTGCCACTGGTAACCCAATCCCGAAGATAACGTGGCTGAAGAATGGAAAGGCTGTGGCTTCGAGAGACACATTTAAGTTTGCAGCGTACAGGAATGATTCTGGAAAGTACTGGTGTGTAGTAGAGAATGACTTGGACATCAGTATCAACACGAGCGCCTACCTCGACGTACAGTATCCTCCAAGTTGTGTCGTAAGCCCGACTTACCAGACAGTCGTCGAGGGCAACATCGCAACATTCCACTGCAATGCCACTGGGAACCCAATCCCAGAAATATCATGGATAAAAGATGGGATGACTGTGGCTTCAGGAAACACACTGAACATTGAAGCGAATAGGACTCATTCTGGAGAATATTGGTGTTCTGCACAAAACACGTTTAACAAGACTGCAAAAGCAAGAAGCTACCTTGATGTACACTTTAAACCCGAAAGAACGCATCTTTCAGTCGACGCAGATATCACGATAGCTATGCAATTTGGCAGCTCCGTCAAATTCAACTGTACGGCAGAGTCTCGGCCGGTTGTCGATGAGTACAGATTTTATCGCGATCAGGAACCACTTGGCAGCAACACAACTGGTGTATATCATCTTGAACTTCAAAGAAGTGGTTGGTATTCCTGTGTTGCCGTTAACAGTGTTGGGAGTGGAGAGAAAGCCGAATTGTATATTTCTGTTCATGCTTGGAAACCTTCTTTCCACAGTGTTACATTTGGTCCTTTCTACCTGTTCAAAGATACCCAGGCTCGGTTACCTTGTAAGCCATTAGGAGAGCCACAGCCAGCGGTAAAATGGTTCAAAGATGGTATGGCCGTTACCTATGGGCAAAATACAAGCTACAGGCTTGAGGCAGATGGAACTTTGGCAATAAACAAAGTGAAAGGCGGCGATGCTGGTAGATACACCTGTATGGCTCAGAATTACTTGGGAAAAGCAAATGTAACAGCTCCAGGAATTTTGCTTGAGAGAACAAAGATTATTTTCAAGCCACGCAACAGAACAGTCACAGAGGGGACGAGAGTGATTCTCCAGTGTAAGGCCACTGCGGATTCCTCGTTGGAACTGAGATATATCTGGAAAAAAGACGGTGCTGATATCACTTATGGCTCAAAGATCCAGTTGCTGGAAGGagaaagtgttttaaaaatACCAAACATTACTTTTAACGAGGCCGGCGTTTACAAGTGTGTTGCGTACACTCCAGAACCTAAAAGATCCGAAGACAGCGCAGTCGCTATTGTGTCGATTACAGGTGTTCCCTCGCCTCCACGCAGTCTTCAAATATCAGACTGCTACAACAGGAAGGCCAACCTTTCCTGGAGTCCTGTGGTGTTTAATGACACTCGTGTTACTCATTTCCTGATTGATCAGGAAACAGATCACGAACCGTCTGTTTTCAAAATCATATATAACGTGTCTGACCCAAATGTGACGTCAGTAACCTTGACCTTACCGGGCTGGGCCACCTTACGTTTCCGTGTGAGGGCCGTGAACAACGTGGGACCGAGTCGCCCCAGTCTTCCGACGGCGAAAGGCATCTGTAGAACTTCAGTTGGAATTCCAAACAGATATCCCGCTAATTTAAGAGGCATTCCTTTGAAGGCAAATGAGCTTTCCATCACTTGGACTCCTATGCCCAAGGACGAGTGGAGCGCCCCAGGTTGTTACTACATACTGATGTACAGAAAGGTTAATGGCCATATTACTGAATGGTCGAAGGAAAAAATCGGTGATCCGAGAGTCGGAGCGTTTGCATTACCCAACCCGGGTTATTATCAGTTGTGGGAGGTAATGATTCACGCGGGAAATCACGAAGGTCCCGGACCAGTCAGTCCTGTTGTAAGATCGTATTCTGGTCAGAATGCACCCGCTGCCAAACCGGAACGTACACAAGCGGGGACAGTATCTGACAGCAGTGTCACACTGAGCTGGAAACCTGTTACAATTAAACGAGGGAGTGTTGATGGATACAGGATTTATTACTGGGGTGAAAGTCGTGCAATAACTTCCAGAAGAAAACGACGTGCTATGCCCAGCACAGCTGATTCTCTGCAGGTACAAGGAGGCAATACTCGACAAGCTACTCTCACAGGGCTAAAGCCGTACACTAATTACAACGTAGTCGTGAAGGCTTTTAACTCTGGTGGCGAGGGACCTGCAAGTGAAACAATGCTCTTTGAAACGAAGGAGGGTGAACCAGGCCCTCCCTCGGACGTACAAATTATTCCGTTCGGAGAGTTTCTCTTGGTCACGTGGACACCGCCCAAGGAGCCAAATGGGATCATTACAAAATACCAAGTGGGGTCCGCTGAGTACAACGTGTCATCGCCTGAGAATGTGGTTGTTAATATGAAGACAGTCGAAGCTAATGTACGACAGAAACTGTTGAATAAAAGAAGGTTTGAGACAAGTTACATCGTGGAATTGCGAGCAAGAACTAGTATGGGCTGGGGTACCAGGTCGAGAACGACTACAACAACCATCAAGAGATCAGcTCCTGCTAAACCAGATAAACCCACTGTGATCGTGGCACAGGAGGGCGCTGTCAGTGTGGTGTACAACTTTGGTGTTGGAGGAGGGTGGACCCATGCGTTCAAAGTGTTATACAGAAAGAAAGTAGATGGGGAACCGTTCCAGGAGACAGCCTGGGTGGATCATTTCAACACGAAATGGACCAAAGTCACCAATCTGGAATCTGGGCTATATGAATTCAAAACCATTGGTAGAAACACTGTAGGAACAAGCCCAGAAAGTGACGTCACTGAAACTAGACAACCGGACACCGATGCTGTTGTCAGCGATAAGCAGTTAAGCTCCCCGATGTATGAGTCAGACTGGTTCATCACACTCATCATTCTCTCAGCCGGGGTACTTCTTCTTTTGGTGATCGTTGTTCTGGTCAAACGTCACAGGCGAAGGCGCAACTCAAATTTTAAAGTTTCCGAACACgagaaagaaattgaaaaagaaaaagaactccCTGTCCCCGTTGACTTCAAACCGCGCGAGGACTGGAGAGGAAGACTGGAGGAGATTGACCGTGAAAGCCATGATGACAGTCTGGATGAGTATGGGGGGGAGGGTGTGTATTTCACGGAAGACGGTTCCTTCGTAGGCGAAATGAGTGGCAATAAGAGAGAGTCTACACATGAAGAGGTTCAACATCCAGTTGTGTAA

Transcript

BRAKERLUST00000012003

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8VIW9	Fibronectin type III domain-containing protein OS=Acropora millepora OX=45264 PE=1 SV=1
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000412 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF13882 all species →	Bravo_FIGEY	Bravo-like intracellular region	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR026966 all species →	Domain	Neurofascin/L1/NrCAM, C-terminal domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR051170 all species →	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231 all species →	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERLUSP00000012003.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.