Gene detail

Detailed information of BRAKERLUSP00000012375.1 in Blastomussa wellsi

Genomic Location: not available for this species
NR annotation: XP_020600449.1, FYVE, RhoGEF and PH domain-containing protein 4-like [Orbicella faveolata]
Species abbreviation BWELL · all data for this species · gene families

Sequence

CDS

BRAKERLUST00000012375

ATGGATCAAGCTTCAGCTGAGAAATATCATCTCATTGCCCAACAAAGGGCTGAACAATTTAAGGCAATCAGACATGCGTCTAATTTGACTCGGGCAAGAAGCCAAGATGGACAGCCTGTGGCATACAAGAAtgtgaaagaaaaagcaaatatCAGTAGAAGATCTCGTGTGATGTCAGATCCTGAAATACCTGGCACCCTTGTGATATTGAATGCCAAAGGTTTATTTCAAGGAATGAATGGTAACAATAACAAACAGACCAGGCCAGAAAGTAGTGCTGCTTGTATGAGCACAATGGACACAGACATCAGTAGACCACAGTTCTTTGATCCCTCACTTGGTAAGAAGGAAGTAAAAGTCAGTGATTTGAGAAAGAAATTTGAGGCTGTAGAATGCGATATTACTGGAGAAAAACATGCAGTAACAGGCAGTGATTTCTTGAATCCTTTACACAAGATCAACCAAGACTTGGCTAATTCAAATAATACTGCAAAGAGAACTATCAAGAAAAAGCTTGAAGAAGCACTAACTAGCAATAATGCGCCAACAACGCAGTCAAGTTCTACAGCTTTGAAGACAGGTGAAGTACAAAATGGCAGTATGCCTACCAAGCAATCTGAAGTGAAGGTTGAAATGCCTTCACGACCTCCTCCAAGGGCTCCCTTGGGAGATCCTCTCAAACGGGTGCGGGGGGAATCAGATCCAATGCCGCTGGATGAGAATCGATTTTCTAGAGTCCAGGCCTTTCTACAGGAGACTTTAGAGGAAGTGGATCAGGAAGAAAGTTCACCACAACATAgatcagaaactgaaaacatTTCCACAGCCAGtgtgaataataataatgtcaATAATGGTGTTGCTGctgatgatgacgataatgatgatgatgattttgaCAGTGATGAGTGGGGCAGTgattttgatgatgatgatgacgacgaggACGATGATCAGCAAAAGCGTGACTCTCAATCAAGTCATGGCAGTTTTTGTGATGCTGAGCCTATTgAATTCCCAGATGCTGCAAGCAAAAAGCTCTACAACATTGCCATGGAAATTCTCACCACTGAAAGAGCGTATGTTAGAAGGCTTCATCTTCTTGACCAGGTGTTCTACTTGCAAATTAATAACAGATGTTGTGCTAAAGGAATTCTGCCACTGGAAGTGCTCAATGATATTTTCTCTAACATACAAGCTATTCACCAACTCCACAGAGATTTTCTGTTGCCTAAACTAGAAACAAGAATGAAAGAATGGGGTACCAACAACCAAATTGGAGACATCCTTAAAGGGCTGGCACCTTTTTTAAAGATGTATACCCTTTATGTTGGAAACTTCGACAAAGCAACTGAAACCTTGTCACTTTGGGCCAAAAAGTCACCAACTATGGCAGAGTTGATCAATGAAATTCAAAAAAGTGAAGAGTGTGAACATCTTACTCTTCAGCATCACATGTTGGAACCAGTACAGAGAGTTCCCAGATACCAACTGCTTCTAAAAGACTATGTTTCCAAGCTGCCCAAAGATTCCACTGACTTAAAGAACACTTCAGATGCTTTAGAAATAATCTCCGAGTCTGCTCGACATGCCAACGACAGCATGAAAAAGACGGAGCGGTTCAAGATTCTTTTGGAAATCCAGGAGAGAATTGGAGTGGACTATCCACTCATTACAGCCAGCCGTGAACTTGTTATGGAGGGTGAATTTCGGAAGGTAGCAGCTAGAACAACAGACAGTCACCAAGAAAGAACTCTAATGCTGTTTAATGATGTTCTTCTTTGCTGTGCCAAGTCTCCGGGGACAAATAAATACAAAGTGAAAGTCGAAATGGATTTATTCGGAATGGAAGTCGAAGATGTTGATGAAGAACTAGAAATCGAGAATTCCTTTCGTATTATCAGTAAGCAAAGAGTCATGGATTTTACCGCGCCATCTGCCGAAGCAAAACAGGCTTGGGTGAACAAGCTACAAGATGCGGTGAACGAACTCACAACAAAGCGAGAGAGTTACAGGAGAGCCAGCAAGATTGAAGTTATGAAGGACGTGGAGCTGGGTAAGAAAGCGCCGGCCTGGGTCCGAGACGAGGCAGTGAGCATGTGCATGCTTTGTGACGTCATGTTTACCAAGTTCCGGCGGCGGCATCACTGTCGCGCCTGTGGGAGAGTGGTGTGCGGAAATTGCTCCAGCTTAAAAGCAGCGCTAGAGTACAAGaatggaaaacttgaaaaagtttgCGAAGTTTGCCACCAAATTCTTGTGAAGGGCTCGAGTGAAGCAACGGTCAAGGAACCGGAGGGGAAAGGACAAAGCGTTTTGAAAATCGGCGATGAGTCTAAAATCTGGCATAGTGGATATTTGAATCATAAGATGAAAAGCGAGAAAAGCTGGCAGAAGAGATGGTTTGTGTTGTCAAGTGACTTTGTTCTGTTCCGGTACAAGGCCAAAAAGGACACCAAAGCCGAGTTTAATCTCCCTCTTCCTGGTCACACTGTTAATAAACCATCTTTGgcAGACGACGTGGACCGCAAAAATGTGTTCAAAGTACATCACAAGAATTTCATGGTTTTCTTCTTTGAGGCCGAAAGTGAGGAGAGTATGAACAGgTGGATGGAATTGTTGGAACATGCAACCAAGGCGGAACAGATAGACGAAGAAGAGCTTGAAAAACAGAAGAGCTTTGGACGAGCAAACAGTGATTTACTAGAATAG

Transcript

BRAKERLUST00000012375

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96M96	FYVE, RhoGEF and PH domain-containing protein 4 OS=Homo sapiens OX=9606 GN=FGD4 PE=1 SV=2
Q91ZT5	FYVE, RhoGEF and PH domain-containing protein 4 OS=Mus musculus OX=10090 GN=Fgd4 PE=1 SV=1
O88387	FYVE, RhoGEF and PH domain-containing protein 4 OS=Rattus norvegicus OX=10116 GN=Fgd4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001392 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR051092 all species →	Family	FYVE, RhoGEF and PH domain-containing	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12673 all species →	FACIOGENITAL DYSPLASIA PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005089 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0046847 all species →	Biological Process	filopodium assembly	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERLUSP00000012375.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.