Genomic Location: chr2:14497157...14503162
NR annotation: XP_020623825.1, matrix metalloproteinase-16-like [Orbicella faveolata]
Species Blastomussa wellsi · all data for this species · gene families
| CDS |
| BRAKERLUST00000012854 |
| Transcript |
| BRAKERLUST00000012854 |
| Protein |
| BRAKERLUSP00000012854.1 |
| UniProt accession | Description |
|---|---|
| P23097 | Collagenase 3 (Fragment) OS=Rattus norvegicus OX=10116 GN=Mmp13 PE=1 SV=1 |
| O62806 | Collagenase 3 OS=Oryctolagus cuniculus OX=9986 GN=MMP13 PE=2 SV=1 |
| P33435 | Collagenase 3 OS=Mus musculus OX=10090 GN=Mmp13 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000173 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00413 all species → | Peptidase_M10 | Matrixin | Domain | Interproscan |
| PF00045 all species → | Hemopexin | Hemopexin | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036375 all species → | Homologous_superfamily | Hemopexin-like domain superfamily | Interproscan |
| IPR018486 all species → | Conserved_site | Hemopexin, conserved site | Interproscan |
| IPR024079 all species → | Homologous_superfamily | Metallopeptidase, catalytic domain superfamily | Interproscan |
| IPR000585 all species → | Domain | Hemopexin-like domain | Interproscan |
| IPR001818 all species → | Domain | Peptidase M10, metallopeptidase | Interproscan |
| IPR018487 all species → | Repeat | Hemopexin-like repeats | Interproscan |
| IPR021190 all species → | Family | Peptidase M10A | Interproscan |
| IPR033739 all species → | Domain | Peptidase M10A, catalytic domain | Interproscan |
| IPR006026 all species → | Domain | Peptidase, metallopeptidase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10201 all species → | MATRIX METALLOPROTEINASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008237 all species → | Molecular Function | metallopeptidase activity | Interproscan |
| GO:0004222 all species → | Molecular Function | metalloendopeptidase activity | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0031012 all species → | Cellular Component | extracellular matrix | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0030198 all species → | Biological Process | extracellular matrix organization | Interproscan |
| GO:0030574 all species → | Biological Process | collagen catabolic process | Interproscan |
BRAKERLUSP00000012854.1.Genes whose expression across the transcriptome samples of Blastomussa wellsi tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Blastomussa wellsi, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
